renv.lock

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      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
      "Contact": "<MASS@stats.ox.ac.uk>",
      "NeedsCompilation": "yes",
      "Author": "Brian Ripley [aut, cre, cph], Bill Venables [ctb], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb]",
      "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
      "Repository": "CRAN"
    },
    "Matrix": {
      "Package": "Matrix",
      "Version": "1.6-5",
      "Source": "Repository",
      "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
      "Date": "2024-01-06",
      "Priority": "recommended",
      "Title": "Sparse and Dense Matrix Classes and Methods",
      "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries.  Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
      "License": "GPL (>= 2) | file LICENCE",
      "URL": "https://Matrix.R-forge.R-project.org",
      "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
      "Contact": "Matrix-authors@R-project.org",
      "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries, notably CHOLMOD and AMD\", \"collaborators listed in dir(pattern=\\\"^[A-Z]+[.]txt$\\\", full.names=TRUE, system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"))\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"R Core Team\", role = \"ctb\", comment = \"base R's matrix implementation\"))",
      "Depends": [
        "R (>= 3.5.0)",
        "methods"
      ],
      "Imports": [
        "grDevices",
        "graphics",
        "grid",
        "lattice",
        "stats",
        "utils"
      ],
      "Suggests": [
        "MASS",
        "datasets",
        "sfsmisc",
        "tools"
      ],
      "Enhances": [
        "SparseM",
        "graph"
      ],
      "LazyData": "no",
      "LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
      "BuildResaveData": "no",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>), Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>, SuiteSparse libraries, notably CHOLMOD and AMD, collaborators listed in dir(pattern=\"^[A-Z]+[.]txt$\", full.names=TRUE, system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"))), Jens Oehlschlägel [ctb] (initial nearPD()), Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), R Core Team [ctb] (base R's matrix implementation)",
      "Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
      "Repository": "CRAN"
    },
    "MatrixModels": {
      "Package": "MatrixModels",
      "Version": "0.5-4",
      "Source": "Repository",
      "VersionNote": "Released 0.5-3 on 2023-11-06",
      "Date": "2025-03-25",
      "Title": "Modelling with Sparse and Dense Matrices",
      "Contact": "Matrix-authors@R-project.org",
      "Authors@R": "c( person(\"Douglas\", \"Bates\", role = \"aut\", email = \"bates@stat.wisc.edu\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")))",
      "Description": "Generalized Linear Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "stats",
        "methods",
        "Matrix (>= 1.6-0)",
        "Matrix(< 1.8-0)"
      ],
      "ImportsNote": "_not_yet_stats4",
      "Encoding": "UTF-8",
      "LazyLoad": "yes",
      "License": "GPL (>= 2)",
      "URL": "https://Matrix.R-forge.R-project.org/, https://r-forge.r-project.org/R/?group_id=61",
      "BugReports": "https://R-forge.R-project.org/tracker/?func=add&atid=294&group_id=61",
      "NeedsCompilation": "no",
      "Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>)",
      "Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
      "Repository": "RSPM"
    },
    "OlinkAnalyze": {
      "Package": "OlinkAnalyze",
      "Version": "4.2.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Facilitate Analysis of Proteomic Data from Olink",
      "Authors@R": "c( person(\"Kathleen\", \"Nevola\", , \"biostattools@olink.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5183-6444\", \"kathy-nevola\")), person(\"Marianne\", \"Sandin\", role = \"aut\", comment = c(ORCID = \"0000-0001-6186-963X\", \"marisand\")), person(\"Jamey\", \"Guess\", role = \"aut\", comment = c(ORCID = \"0000-0002-4017-0923\", \"jrguess\")), person(\"Simon\", \"Forsberg\", role = \"aut\", comment = c(ORCID = \"0000-0002-7451-9222\", \"simfor\")), person(\"Christoffer\", \"Cambronero\", role = \"aut\", comment = c(\"Orbmac\")), person(\"Pascal\", \"Pucholt\", role = \"aut\", comment = c(ORCID = \"0000-0003-3342-1373\", \"AskPascal\")), person(\"Boxi\", \"Zhang\", role = \"aut\", comment = c(ORCID = \"0000-0001-7758-6204\", \"boxizhang\")), person(\"Masoumeh\", \"Sheikhi\", role = \"aut\", comment = c(\"MasoumehSheikhi\")), person(\"Klev\", \"Diamanti\", role = \"aut\", comment = c(ORCID = \"0000-0002-4922-8415\", \"klevdiamanti\")), person(\"Amrita\", \"Kar\", role = \"aut\", comment = c(\"amrita-kar\")), person(\"Lei\", \"Conze\", role = \"aut\",  comment = c(\"leiliuC\")), person(\"Kristyn\", \"Chin\", role = \"aut\", comment = c(\"kristynchin-olink\")), person(\"Danai\", \"Topouza\", role = \"aut\", comment = c(\"dtopouza\", ORCID = \"0000-0002-6897-9281\")), person(\"Stephen\", \"Pollo\", role = \"aut\", comment = c(\"spollo-olprot\", ORCID = \"0000-0001-9252-4976\")), person(\"Kang\", \"Dong\", role = \"aut\", comment = c(\"KangD-dev\", ORCID = \"0000-0002-4567-5007\")), person(\"Kristian\", \"Hodén\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0354-0662\", \"kristianHoden\")), person(\"Per\", \"Eriksson\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7633-403X\", \"b_watcher\")), person(\"Nicola\", \"Moloney\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4967-3284\")), person(\"Britta\", \"Lötstedt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3545-5489\")), person(\"Emmett\", \"Sprecher\", role = \"ctb\", comment = c(ORCID = \"0000-0002-7710-695X\")), person(\"Jessica\", \"Barbagallo\", role = \"ctb\", comment = c(\"jbarbagallo\")), person(\"Olof\", \"Mansson\", role = \"ctr\", comment = c(\"olofmansson\")), person(\"Ola\", \"Caster\", role = \"ctb\", comment = c(\"OlaCaster\")), person(\"Olink\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A collection of functions to facilitate analysis of proteomic data from Olink, primarily NPX data that has been exported from Olink Software. The functions also work on QUANT data from Olink by log- transforming the QUANT data. The functions are focused on reading data, facilitating data wrangling and quality control analysis, performing statistical analysis and generating figures to visualize the results of the statistical analysis. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.",
      "License": "AGPL (>= 3)",
      "Contact": "biostattools@olink.com",
      "Depends": [
        "R (>= 4.1.0)"
      ],
      "Imports": [
        "broom",
        "car",
        "cli (>= 3.6.2)",
        "dplyr (>= 1.1.1)",
        "data.table",
        "emmeans",
        "forcats",
        "generics",
        "ggplot2",
        "ggpubr",
        "ggrepel",
        "grDevices",
        "grid",
        "magrittr",
        "methods",
        "readxl",
        "rlang",
        "rstatix",
        "stats",
        "stringr",
        "tibble",
        "tidyr",
        "tidyselect",
        "tools",
        "utils"
      ],
      "Suggests": [
        "arrow",
        "clusterProfiler",
        "extrafont",
        "FSA",
        "ggplotify",
        "kableExtra",
        "knitr",
        "lme4",
        "lmerTest",
        "markdown",
        "msigdbr",
        "openssl",
        "ordinal",
        "pheatmap",
        "rmarkdown",
        "scales",
        "systemfonts",
        "testthat (>= 3.0.0)",
        "umap",
        "vdiffr",
        "withr",
        "zip"
      ],
      "VignetteBuilder": "kableExtra, knitr",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.3.2",
      "URL": "https://olink.com/ https://github.com/Olink-Proteomics/OlinkRPackage",
      "NeedsCompilation": "no",
      "Author": "Kathleen Nevola [aut, cre] (<https://orcid.org/0000-0002-5183-6444>, kathy-nevola), Marianne Sandin [aut] (<https://orcid.org/0000-0001-6186-963X>, marisand), Jamey Guess [aut] (<https://orcid.org/0000-0002-4017-0923>, jrguess), Simon Forsberg [aut] (<https://orcid.org/0000-0002-7451-9222>, simfor), Christoffer Cambronero [aut] (Orbmac), Pascal Pucholt [aut] (<https://orcid.org/0000-0003-3342-1373>, AskPascal), Boxi Zhang [aut] (<https://orcid.org/0000-0001-7758-6204>, boxizhang), Masoumeh Sheikhi [aut] (MasoumehSheikhi), Klev Diamanti [aut] (<https://orcid.org/0000-0002-4922-8415>, klevdiamanti), Amrita Kar [aut] (amrita-kar), Lei Conze [aut] (leiliuC), Kristyn Chin [aut] (kristynchin-olink), Danai Topouza [aut] (dtopouza, <https://orcid.org/0000-0002-6897-9281>), Stephen Pollo [aut] (spollo-olprot, <https://orcid.org/0000-0001-9252-4976>), Kang Dong [aut] (KangD-dev, <https://orcid.org/0000-0002-4567-5007>), Kristian Hodén [ctb] (<https://orcid.org/0000-0003-0354-0662>, kristianHoden), Per Eriksson [ctb] (<https://orcid.org/0000-0001-7633-403X>, b_watcher), Nicola Moloney [ctb] (<https://orcid.org/0000-0003-4967-3284>), Britta Lötstedt [ctb] (<https://orcid.org/0000-0003-3545-5489>), Emmett Sprecher [ctb] (<https://orcid.org/0000-0002-7710-695X>), Jessica Barbagallo [ctb] (jbarbagallo), Olof Mansson [ctr] (olofmansson), Ola Caster [ctb] (OlaCaster), Olink [cph, fnd]",
      "Maintainer": "Kathleen Nevola <biostattools@olink.com>",
      "Repository": "RSPM"
    },
    "PKI": {
      "Package": "PKI",
      "Version": "0.1-14",
      "Source": "Repository",
      "Title": "Public Key Infrastucture for R Based on the X.509 Standard",
      "Author": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Depends": [
        "R (>= 2.9.0)",
        "base64enc"
      ],
      "Enhances": [
        "gmp"
      ],
      "Description": "Public Key Infrastucture functions such as verifying certificates, RSA encription and signing which can be used to build PKI infrastructure and perform cryptographic tasks.",
      "License": "GPL-2 | GPL-3 | file LICENSE",
      "URL": "http://www.rforge.net/PKI",
      "SystemRequirements": "OpenSSL library and headers (openssl-dev or similar)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
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      "Version": "2.6.1",
      "Source": "Repository",
      "Title": "Encapsulated Classes with Reference Semantics",
      "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.",
      "License": "MIT + file LICENSE",
      "URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
      "BugReports": "https://github.com/r-lib/R6/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Suggests": [
        "lobstr",
        "testthat (>= 3.0.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "RSPM"
    },
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      "Package": "RColorBrewer",
      "Version": "1.1-3",
      "Source": "Repository",
      "Date": "2022-04-03",
      "Title": "ColorBrewer Palettes",
      "Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\", \"cre\"), email = \"erich.neuwirth@univie.ac.at\"))",
      "Author": "Erich Neuwirth [aut, cre]",
      "Maintainer": "Erich Neuwirth <erich.neuwirth@univie.ac.at>",
      "Depends": [
        "R (>= 2.0.0)"
      ],
      "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.",
      "License": "Apache License 2.0",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "RCurl": {
      "Package": "RCurl",
      "Version": "1.98-1.17",
      "Source": "Repository",
      "Title": "General Network (HTTP/FTP/...) Client Interface for R",
      "Authors@R": "c(person(\"CRAN Team\", role = c('ctb', 'cre'), email = \"CRAN@r-project.org\", comment = \"de facto maintainer since 2013\"), person(\"Duncan\", \"Temple Lang\", role = \"aut\", email = \"duncan@r-project.org\", comment = c(ORCID = \"0000-0003-0159-1546\")))",
      "SystemRequirements": "GNU make, libcurl",
      "Description": "A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections.  Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.",
      "License": "BSD_3_clause + file LICENSE",
      "Depends": [
        "R (>= 3.4.0)",
        "methods"
      ],
      "Imports": [
        "bitops"
      ],
      "Suggests": [
        "XML"
      ],
      "Collate": "aclassesEnums.R bitClasses.R xbits.R base64.R binary.S classes.S curl.S curlAuthConstants.R curlEnums.R curlError.R curlInfo.S dynamic.R form.S getFormParams.R getURLContent.R header.R http.R httpError.R httpErrors.R iconv.R info.S mime.R multi.S options.S scp.R support.S upload.R urlExists.R zclone.R zzz.R",
      "NeedsCompilation": "yes",
      "Author": "CRAN Team [ctb, cre] (de facto maintainer since 2013), Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>)",
      "Maintainer": "CRAN Team <CRAN@r-project.org>",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "RSQLite": {
      "Package": "RSQLite",
      "Version": "2.3.9",
      "Source": "Repository",
      "Title": "SQLite Interface for R",
      "Date": "2024-12-02",
      "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(c(\"David\", \"A.\"), \"James\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"D. Richard\", \"Hipp\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Dan\", \"Kennedy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Joe\", \"Mistachkin\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(, \"SQLite Authors\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Liam\", \"Healy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"R Consortium\", role = \"fnd\"), person(, \"RStudio\", role = \"cph\") )",
      "Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine and for various extensions in a recent version is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.",
      "License": "LGPL (>= 2.1)",
      "URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite",
      "BugReports": "https://github.com/r-dbi/RSQLite/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "bit64",
        "blob (>= 1.2.0)",
        "DBI (>= 1.2.0)",
        "memoise",
        "methods",
        "pkgconfig",
        "rlang"
      ],
      "Suggests": [
        "callr",
        "cli",
        "DBItest (>= 1.8.0)",
        "decor",
        "gert",
        "gh",
        "hms",
        "knitr",
        "magrittr",
        "rmarkdown",
        "rvest",
        "testthat (>= 3.0.0)",
        "withr",
        "xml2"
      ],
      "LinkingTo": [
        "plogr (>= 0.2.0)",
        "cpp11 (>= 0.4.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "r-dbi/dbitemplate",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "false",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2.9000",
      "Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'",
      "NeedsCompilation": "yes",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "RSpectra": {
      "Package": "RSpectra",
      "Version": "0.16-2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Solvers for Large-Scale Eigenvalue and SVD Problems",
      "Date": "2024-07-18",
      "Authors@R": "c( person(\"Yixuan\", \"Qiu\", , \"yixuan.qiu@cos.name\", c(\"aut\", \"cre\")), person(\"Jiali\", \"Mei\", , \"vermouthmjl@gmail.com\", \"aut\", comment = \"Function interface of matrix operation\"), person(\"Gael\", \"Guennebaud\", , \"gael.guennebaud@inria.fr\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\"), person(\"Jitse\", \"Niesen\", , \"jitse@maths.leeds.ac.uk\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\") )",
      "Description": "R interface to the 'Spectra' library <https://spectralib.org/> for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function that does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. The matrix to be computed on can be dense, sparse, or in the form of an operator defined by the user.",
      "License": "MPL (>= 2)",
      "URL": "https://github.com/yixuan/RSpectra",
      "BugReports": "https://github.com/yixuan/RSpectra/issues",
      "Depends": [
        "R (>= 3.0.2)"
      ],
      "Imports": [
        "Matrix (>= 1.1-0)",
        "Rcpp (>= 0.11.5)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown",
        "prettydoc"
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        "RcppEigen (>= 0.3.3.3.0)"
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      "NeedsCompilation": "yes",
      "Author": "Yixuan Qiu [aut, cre], Jiali Mei [aut] (Function interface of matrix operation), Gael Guennebaud [ctb] (Eigenvalue solvers from the 'Eigen' library), Jitse Niesen [ctb] (Eigenvalue solvers from the 'Eigen' library)",
      "Maintainer": "Yixuan Qiu <yixuan.qiu@cos.name>",
      "Repository": "CRAN"
    },
    "Rcpp": {
      "Package": "Rcpp",
      "Version": "1.0.14",
      "Source": "Repository",
      "Title": "Seamless R and C++ Integration",
      "Date": "2025-01-11",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))",
      "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013, <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018, <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
      "Imports": [
        "methods",
        "utils"
      ],
      "Suggests": [
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        "inline",
        "rbenchmark",
        "pkgKitten (>= 0.1.2)"
      ],
      "URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp",
      "License": "GPL (>= 2)",
      "BugReports": "https://github.com/RcppCore/Rcpp/issues",
      "MailingList": "rcpp-devel@lists.r-forge.r-project.org",
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), JJ Allaire [aut] (<https://orcid.org/0000-0003-0174-9868>), Kevin Ushey [aut] (<https://orcid.org/0000-0003-2880-7407>), Qiang Kou [aut] (<https://orcid.org/0000-0001-6786-5453>), Nathan Russell [aut], Iñaki Ucar [aut] (<https://orcid.org/0000-0001-6403-5550>), Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), John Chambers [aut]",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "RSPM"
    },
    "RcppArmadillo": {
      "Package": "RcppArmadillo",
      "Version": "14.4.0-1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library",
      "Date": "2025-02-17",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))",
      "Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries.  The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
      "License": "GPL (>= 2)",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.3.0)"
      ],
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        "Rcpp"
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        "stats",
        "utils",
        "methods"
      ],
      "Suggests": [
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        "Matrix (>= 1.3.0)",
        "pkgKitten",
        "reticulate",
        "slam"
      ],
      "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html",
      "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues",
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Binxiang Ni [aut], Conrad Sanderson [aut] (<https://orcid.org/0000-0002-0049-4501>)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "RcppEigen": {
      "Package": "RcppEigen",
      "Version": "0.3.4.0.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library",
      "Date": "2024-08-23",
      "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))",
      "Copyright": "See the file COPYRIGHTS for various Eigen copyright details",
      "Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms.  It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
      "License": "GPL (>= 2) | file LICENSE",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Imports": [
        "Rcpp (>= 0.11.0)",
        "stats",
        "utils"
      ],
      "Suggests": [
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        "inline",
        "tinytest",
        "pkgKitten",
        "microbenchmark"
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      "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html",
      "BugReports": "https://github.com/RcppCore/RcppEigen/issues",
      "NeedsCompilation": "yes",
      "Author": "Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Yixuan Qiu [aut] (<https://orcid.org/0000-0003-0109-6692>), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "RcppTOML": {
      "Package": "RcppTOML",
      "Version": "0.2.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Bindings to Parser for \"Tom's Obvious Markup Language\"",
      "Date": "2025-03-08",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Mark\", \"Gillard\", role = \"aut\", comment = \"Author of 'toml++' header library\"))",
      "Description": "The configuration format defined by 'TOML' (which expands to \"Tom's Obvious Markup Language\") specifies an excellent format (described at <https://toml.io/en/>) suitable for both human editing as well as the common uses of a machine-readable format. This package uses 'Rcpp' to connect to the 'toml++' parser written by Mark Gillard to R.",
      "SystemRequirements": "A C++17 compiler",
      "BugReports": "https://github.com/eddelbuettel/rcpptoml/issues",
      "URL": "http://dirk.eddelbuettel.com/code/rcpp.toml.html",
      "Imports": [
        "Rcpp (>= 1.0.8)"
      ],
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Suggests": [
        "tinytest"
      ],
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Mark Gillard [aut] (Author of 'toml++' header library)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
    },
    "Rdpack": {
      "Package": "Rdpack",
      "Version": "2.6.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Update and Manipulate Rd Documentation Objects",
      "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\",  role = c(\"aut\", \"cre\"),  email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\",  family = \"Murdoch\",  role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )",
      "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.",
      "URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)",
      "BugReports": "https://github.com/GeoBosh/Rdpack/issues",
      "Depends": [
        "R (>= 2.15.0)",
        "methods"
      ],
      "Imports": [
        "tools",
        "utils",
        "rbibutils (>= 1.3)"
      ],
      "Suggests": [
        "grDevices",
        "testthat",
        "rstudioapi",
        "rprojroot",
        "gbRd"
      ],
      "License": "GPL (>= 2)",
      "LazyLoad": "yes",
      "RoxygenNote": "7.1.1",
      "NeedsCompilation": "no",
      "Author": "Georgi N. Boshnakov [aut, cre] (<https://orcid.org/0000-0003-2839-346X>), Duncan Murdoch [ctb]",
      "Maintainer": "Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
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      "Version": "0.40.2",
      "Source": "Bioconductor",
      "Title": "Foundation of vector-like and list-like containers in Bioconductor",
      "Description": "The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, Factor, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).",
      "biocViews": "Infrastructure, DataRepresentation",
      "URL": "https://bioconductor.org/packages/S4Vectors",
      "BugReports": "https://github.com/Bioconductor/S4Vectors/issues",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "Authors@R": "c( person(\"Hervé\", \"Pagès\", role=c(\"aut\", \"cre\"), email=\"hpages.on.github@gmail.com\"), person(\"Michael\", \"Lawrence\", role=\"aut\"), person(\"Patrick\", \"Aboyoun\", role=\"aut\"), person(\"Aaron\", \"Lun\", role=\"ctb\"), person(\"Beryl\", \"Kanali\", role=\"ctb\", comment=\"Converted 'RleTricks' vignette from Sweave to RMarkdown.\"))",
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        "methods",
        "utils",
        "stats",
        "stats4",
        "BiocGenerics (>= 0.37.0)"
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      "Suggests": [
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "Matrix",
        "DelayedArray",
        "ShortRead",
        "graph",
        "data.table",
        "RUnit",
        "BiocStyle",
        "knitr"
      ],
      "VignetteBuilder": "knitr",
      "Collate": "S4-utils.R show-utils.R utils.R normarg-utils.R bindROWS.R LLint-class.R isSorted.R subsetting-utils.R vector-utils.R integer-utils.R character-utils.R raw-utils.R eval-utils.R map_ranges_to_runs.R RectangularData-class.R Annotated-class.R DataFrame_OR_NULL-class.R Vector-class.R Vector-comparison.R Vector-setops.R Vector-merge.R Hits-class.R Hits-comparison.R Hits-setops.R Rle-class.R Rle-utils.R Factor-class.R List-class.R List-comparison.R splitAsList.R List-utils.R SimpleList-class.R HitsList-class.R DataFrame-class.R DataFrame-combine.R DataFrame-comparison.R DataFrame-utils.R DataFrameFactor-class.R TransposedDataFrame-class.R Pairs-class.R FilterRules-class.R stack-methods.R expand-methods.R aggregate-methods.R shiftApply-methods.R zzz.R",
      "git_url": "https://git.bioconductor.org/packages/S4Vectors",
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      "git_last_commit": "8cd5cb3",
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      "NeedsCompilation": "yes",
      "Author": "Hervé Pagès [aut, cre], Michael Lawrence [aut], Patrick Aboyoun [aut], Aaron Lun [ctb], Beryl Kanali [ctb] (Converted 'RleTricks' vignette from Sweave to RMarkdown.)",
      "Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>"
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      "Source": "Repository",
      "Authors@R": "c( person(\"Roger\", \"Koenker\",  role = c(\"cre\",\"aut\"), email =  \"rkoenker@uiuc.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\",  role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email =  \"pin.ng@nau.edu\") , person(\"Yousef\", \"Saad\",  role = c(\"ctb\"), comment = \"author of sparskit2\") , person(\"Ben\", \"Shaby\", role = c(\"ctb\"), comment = \"author of chol2csr\") , person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"chol() tweaks; S4\", ORCID = \"0000-0002-8685-9910\")) )",
      "Maintainer": "Roger Koenker <rkoenker@uiuc.edu>",
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        "R (>= 2.15)",
        "methods"
      ],
      "Imports": [
        "graphics",
        "stats",
        "utils"
      ],
      "VignetteBuilder": "knitr",
      "Suggests": [
        "knitr"
      ],
      "Description": "Some basic linear algebra functionality for sparse matrices is provided:  including Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.",
      "License": "GPL (>= 2)",
      "Title": "Sparse Linear Algebra",
      "URL": "http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html",
      "NeedsCompilation": "yes",
      "Author": "Roger Koenker [cre, aut], Pin Tian Ng [ctb] (Contributions to Sparse QR code), Yousef Saad [ctb] (author of sparskit2), Ben Shaby [ctb] (author of chol2csr), Martin Maechler [ctb] (chol() tweaks; S4, <https://orcid.org/0000-0002-8685-9910>)",
      "Repository": "CRAN"
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      "Version": "0.42.0",
      "Source": "Bioconductor",
      "Title": "Foundation of external vector representation and manipulation in Bioconductor",
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        "utils",
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      "git_url": "https://git.bioconductor.org/packages/XVector",
      "git_branch": "RELEASE_3_18",
      "git_last_commit": "e2c2897",
      "git_last_commit_date": "2023-10-24",
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      "Version": "1.4-8",
      "Source": "Repository",
      "Date": "2024-09-08",
      "Title": "Combine Multidimensional Arrays",
      "Authors@R": "c(person(\"Tony\", \"Plate\", email = \"tplate@acm.org\", role = c(\"aut\", \"cre\")), person(\"Richard\", \"Heiberger\", role = c(\"aut\")))",
      "Maintainer": "Tony Plate <tplate@acm.org>",
      "Description": "Combine multidimensional arrays into a single array. This is a generalization of 'cbind' and 'rbind'.  Works with vectors, matrices, and higher-dimensional arrays (aka tensors). Also provides functions 'adrop', 'asub', and 'afill' for manipulating, extracting and replacing data in arrays.",
      "Depends": [
        "R (>= 1.5.0)"
      ],
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        "methods",
        "utils"
      ],
      "License": "MIT + file LICENSE",
      "NeedsCompilation": "no",
      "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
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      "Version": "5.8-1",
      "Source": "Repository",
      "Date": "2024-12-10",
      "Title": "Analyses of Phylogenetics and Evolution",
      "Authors@R": "c(person(\"Emmanuel\", \"Paradis\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Emmanuel.Paradis@ird.fr\", comment = c(ORCID = \"0000-0003-3092-2199\")), person(\"Simon\", \"Blomberg\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-1062-0839\")), person(\"Ben\", \"Bolker\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-2127-0443\")), person(\"Joseph\", \"Brown\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-3835-8062\")), person(\"Santiago\", \"Claramunt\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-8926-5974\")), person(\"Julien\", \"Claude\", role = c(\"aut\", \"cph\"), , comment = c(ORCID = \"0000-0002-9267-1228\")), person(\"Hoa Sien\", \"Cuong\", role = c(\"aut\", \"cph\")), person(\"Richard\", \"Desper\", role = c(\"aut\", \"cph\")), person(\"Gilles\", \"Didier\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-0596-9112\")), person(\"Benoit\", \"Durand\", role = c(\"aut\", \"cph\")), person(\"Julien\", \"Dutheil\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7753-4121\")), person(\"RJ\", \"Ewing\", role = c(\"aut\", \"cph\")), person(\"Olivier\", \"Gascuel\", role = c(\"aut\", \"cph\")), person(\"Thomas\", \"Guillerme\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4325-1275\")), person(\"Christoph\", \"Heibl\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-7655-3299\")), person(\"Anthony\", \"Ives\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-9375-9523\")), person(\"Bradley\", \"Jones\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4498-1069\")), person(\"Franz\", \"Krah\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7866-7508\")), person(\"Daniel\", \"Lawson\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-5311-6213\")), person(\"Vincent\", \"Lefort\", role = c(\"aut\", \"cph\")), person(\"Pierre\", \"Legendre\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-3838-3305\")), person(\"Jim\", \"Lemon\", role = c(\"aut\", \"cph\")), person(\"Guillaume\", \"Louvel\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-7745-0785\")), person(\"Federico\", \"Marotta\", role = c(\"aut\", \"cph\")), person(\"Eric\", \"Marcon\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-5249-321X\")), person(\"Rosemary\", \"McCloskey\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-9772-8553\")), person(\"Johan\", \"Nylander\", role = c(\"aut\", \"cph\")), person(\"Rainer\", \"Opgen-Rhein\", role = c(\"aut\", \"cph\")), person(\"Andrei-Alin\", \"Popescu\", role = c(\"aut\", \"cph\")), person(\"Manuela\", \"Royer-Carenzi\", role = c(\"aut\", \"cph\")), person(\"Klaus\", \"Schliep\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-2941-0161\")), person(\"Korbinian\", \"Strimmer\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7917-2056\")), person(\"Damien\", \"de Vienne\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-9532-5251\")))",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Suggests": [
        "gee",
        "expm",
        "igraph",
        "phangorn",
        "xml2"
      ],
      "Imports": [
        "nlme",
        "lattice",
        "graphics",
        "methods",
        "stats",
        "utils",
        "parallel",
        "Rcpp (>= 0.12.0)",
        "digest"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "ZipData": "no",
      "Description": "Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.",
      "License": "GPL-2 | GPL-3",
      "URL": "https://github.com/emmanuelparadis/ape",
      "BugReports": "https://github.com/emmanuelparadis/ape/issues",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Emmanuel Paradis [aut, cre, cph] (<https://orcid.org/0000-0003-3092-2199>), Simon Blomberg [aut, cph] (<https://orcid.org/0000-0003-1062-0839>), Ben Bolker [aut, cph] (<https://orcid.org/0000-0002-2127-0443>), Joseph Brown [aut, cph] (<https://orcid.org/0000-0002-3835-8062>), Santiago Claramunt [aut, cph] (<https://orcid.org/0000-0002-8926-5974>), Julien Claude [aut, cph] (<https://orcid.org/0000-0002-9267-1228>), Hoa Sien Cuong [aut, cph], Richard Desper [aut, cph], Gilles Didier [aut, cph] (<https://orcid.org/0000-0003-0596-9112>), Benoit Durand [aut, cph], Julien Dutheil [aut, cph] (<https://orcid.org/0000-0001-7753-4121>), RJ Ewing [aut, cph], Olivier Gascuel [aut, cph], Thomas Guillerme [aut, cph] (<https://orcid.org/0000-0003-4325-1275>), Christoph Heibl [aut, cph] (<https://orcid.org/0000-0002-7655-3299>), Anthony Ives [aut, cph] (<https://orcid.org/0000-0001-9375-9523>), Bradley Jones [aut, cph] (<https://orcid.org/0000-0003-4498-1069>), Franz Krah [aut, cph] (<https://orcid.org/0000-0001-7866-7508>), Daniel Lawson [aut, cph] (<https://orcid.org/0000-0002-5311-6213>), Vincent Lefort [aut, cph], Pierre Legendre [aut, cph] (<https://orcid.org/0000-0002-3838-3305>), Jim Lemon [aut, cph], Guillaume Louvel [aut, cph] (<https://orcid.org/0000-0002-7745-0785>), Federico Marotta [aut, cph], Eric Marcon [aut, cph] (<https://orcid.org/0000-0002-5249-321X>), Rosemary McCloskey [aut, cph] (<https://orcid.org/0000-0002-9772-8553>), Johan Nylander [aut, cph], Rainer Opgen-Rhein [aut, cph], Andrei-Alin Popescu [aut, cph], Manuela Royer-Carenzi [aut, cph], Klaus Schliep [aut, cph] (<https://orcid.org/0000-0003-2941-0161>), Korbinian Strimmer [aut, cph] (<https://orcid.org/0000-0001-7917-2056>), Damien de Vienne [aut, cph] (<https://orcid.org/0000-0001-9532-5251>)",
      "Maintainer": "Emmanuel Paradis <Emmanuel.Paradis@ird.fr>",
      "Repository": "CRAN"
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    "aplot": {
      "Package": "aplot",
      "Version": "0.2.5",
      "Source": "Repository",
      "Title": "Decorate a 'ggplot' with Associated Information",
      "Authors@R": "c( person(given = \"Guangchuang\", family = \"Yu\", email = \"guangchuangyu@gmail.com\",   role  = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6485-8781\")), person(\"Shuangbin\", \"Xu\",       email = \"xshuangbin@163.com\",      role = \"ctb\",  comment = c(ORCID=\"0000-0003-3513-5362\")), person(given = \"Thomas\", family = \"Hackl\", email = \"thackl@mit.edu\", role = \"ctb\") )",
      "Description": "For many times, we are not just aligning plots as what 'cowplot' and 'patchwork' did. Users would like to align associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. Inspired by the 'Method 2' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'aplot' provides utilities to aligns associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.",
      "Depends": [
        "R (>= 4.1.0)"
      ],
      "Imports": [
        "ggfun (>= 0.1.3)",
        "ggplot2",
        "ggplotify",
        "patchwork",
        "magrittr",
        "methods",
        "utils",
        "yulab.utils (>= 0.1.9)"
      ],
      "Suggests": [
        "ggtree"
      ],
      "URL": "https://github.com/YuLab-SMU/aplot, https://yulab-smu.top/aplot/",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Shuangbin Xu [ctb] (<https://orcid.org/0000-0003-3513-5362>), Thomas Hackl [ctb]",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Repository": "CRAN"
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      "Package": "askpass",
      "Version": "1.2.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Password Entry Utilities for R, Git, and SSH",
      "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"),  email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))",
      "Description": "Cross-platform utilities for prompting the user for credentials or a  passphrase, for example to authenticate with a server or read a protected key. Includes native programs for MacOS and Windows, hence no 'tcltk' is required.  Password entry can be invoked in two different ways: directly from R via the  askpass() function, or indirectly as password-entry back-end for 'ssh-agent'  or 'git-credential' via the SSH_ASKPASS and GIT_ASKPASS environment variables. Thereby the user can be prompted for credentials or a passphrase if needed  when R calls out to git or ssh.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.r-universe.dev/askpass",
      "BugReports": "https://github.com/r-lib/askpass/issues",
      "Encoding": "UTF-8",
      "Imports": [
        "sys (>= 2.1)"
      ],
      "RoxygenNote": "7.2.3",
      "Suggests": [
        "testthat"
      ],
      "Language": "en-US",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "RSPM"
    },
    "assertthat": {
      "Package": "assertthat",
      "Version": "0.2.1",
      "Source": "Repository",
      "Title": "Easy Pre and Post Assertions",
      "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", c(\"aut\", \"cre\"))",
      "Description": "An extension to stopifnot() that makes it easy to declare  the pre and post conditions that you code should satisfy, while also  producing friendly error messages so that your users know what's gone wrong.",
      "License": "GPL-3",
      "Imports": [
        "tools"
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      "Suggests": [
        "testthat",
        "covr"
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      "RoxygenNote": "6.0.1",
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      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
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    "babelgene": {
      "Package": "babelgene",
      "Version": "22.9",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Gene Orthologs for Model Organisms in a Tidy Data Format",
      "Authors@R": "person(\"Igor\", \"Dolgalev\", , \"igor.dolgalev@nyumc.org\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4451-126X\"))",
      "Description": "Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).",
      "License": "MIT + file LICENSE",
      "URL": "https://igordot.github.io/babelgene/",
      "BugReports": "https://github.com/igordot/babelgene/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "dplyr",
        "methods",
        "rlang"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rmarkdown",
        "testthat (>= 3.0.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.1",
      "NeedsCompilation": "no",
      "Author": "Igor Dolgalev [aut, cre] (<https://orcid.org/0000-0003-4451-126X>)",
      "Maintainer": "Igor Dolgalev <igor.dolgalev@nyumc.org>",
      "Repository": "CRAN"
    },
    "backports": {
      "Package": "backports",
      "Version": "1.5.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Reimplementations of Functions Introduced Since R-3.0.0",
      "Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"michellang@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Duncan\", \"Murdoch\", NULL, \"murdoch.duncan@gmail.com\", role = c(\"aut\")), person(\"R Core Team\", role = \"aut\"))",
      "Maintainer": "Michel Lang <michellang@gmail.com>",
      "Description": "Functions introduced or changed since R v3.0.0 are re-implemented in this package. The backports are conditionally exported in order to let R resolve the function name to either the implemented backport, or the respective base version, if available. Package developers can make use of new functions or arguments by selectively importing specific backports to support older installations.",
      "URL": "https://github.com/r-lib/backports",
      "BugReports": "https://github.com/r-lib/backports/issues",
      "License": "GPL-2 | GPL-3",
      "NeedsCompilation": "yes",
      "ByteCompile": "yes",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "Author": "Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Duncan Murdoch [aut], R Core Team [aut]",
      "Repository": "CRAN"
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    "base64enc": {
      "Package": "base64enc",
      "Version": "0.1-3",
      "Source": "Repository",
      "Title": "Tools for base64 encoding",
      "Author": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Depends": [
        "R (>= 2.9.0)"
      ],
      "Enhances": [
        "png"
      ],
      "Description": "This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.",
      "License": "GPL-2 | GPL-3",
      "URL": "http://www.rforge.net/base64enc",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "bit": {
      "Package": "bit",
      "Version": "4.6.0",
      "Source": "Repository",
      "Title": "Classes and Methods for Fast Memory-Efficient Boolean Selections",
      "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"MichaelChirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Brian\", \"Ripley\", role = \"ctb\") )",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Suggests": [
        "testthat (>= 3.0.0)",
        "roxygen2",
        "knitr",
        "markdown",
        "rmarkdown",
        "microbenchmark",
        "bit64 (>= 4.0.0)",
        "ff (>= 4.0.0)"
      ],
      "Description": "Provided are classes for boolean and skewed boolean vectors, fast boolean methods, fast unique and non-unique integer sorting, fast set operations on sorted and unsorted sets of integers, and foundations for ff (range index, compression, chunked processing).",
      "License": "GPL-2 | GPL-3",
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "Encoding": "UTF-8",
      "URL": "https://github.com/r-lib/bit",
      "VignetteBuilder": "knitr, rmarkdown",
      "RoxygenNote": "7.3.2",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Brian Ripley [ctb]",
      "Maintainer": "Michael Chirico <MichaelChirico4@gmail.com>",
      "Repository": "RSPM"
    },
    "bit64": {
      "Package": "bit64",
      "Version": "4.6.0-1",
      "Source": "Repository",
      "Title": "A S3 Class for Vectors of 64bit Integers",
      "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )",
      "Depends": [
        "R (>= 3.4.0)",
        "bit (>= 4.0.0)"
      ],
      "Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.",
      "License": "GPL-2 | GPL-3",
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "URL": "https://github.com/r-lib/bit64",
      "Encoding": "UTF-8",
      "Imports": [
        "graphics",
        "methods",
        "stats",
        "utils"
      ],
      "Suggests": [
        "testthat (>= 3.0.3)",
        "withr"
      ],
      "Config/testthat/edition": "3",
      "Config/needs/development": "testthat",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]",
      "Maintainer": "Michael Chirico <michaelchirico4@gmail.com>",
      "Repository": "RSPM"
    },
    "bitops": {
      "Package": "bitops",
      "Version": "1.0-9",
      "Source": "Repository",
      "Date": "2024-10-03",
      "Authors@R": "c( person(\"Steve\", \"Dutky\", role = \"aut\", email = \"sdutky@terpalum.umd.edu\", comment = \"S original; then (after MM's port) revised and modified\"), person(\"Martin\", \"Maechler\", role = c(\"cre\", \"aut\"), email = \"maechler@stat.math.ethz.ch\", comment = c(\"Initial R port; tweaks\", ORCID = \"0000-0002-8685-9910\")))",
      "Title": "Bitwise Operations",
      "Description": "Functions for bitwise operations on integer vectors.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/mmaechler/R-bitops",
      "BugReports": "https://github.com/mmaechler/R-bitops/issues",
      "NeedsCompilation": "yes",
      "Author": "Steve Dutky [aut] (S original; then (after MM's port) revised and modified), Martin Maechler [cre, aut] (Initial R port; tweaks, <https://orcid.org/0000-0002-8685-9910>)",
      "Maintainer": "Martin Maechler <maechler@stat.math.ethz.ch>",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "blob": {
      "Package": "blob",
      "Version": "1.2.4",
      "Source": "Repository",
      "Title": "A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "R's raw vector is useful for storing a single binary object. What if you want to put a vector of them in a data frame? The 'blob' package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.",
      "License": "MIT + file LICENSE",
      "URL": "https://blob.tidyverse.org, https://github.com/tidyverse/blob",
      "BugReports": "https://github.com/tidyverse/blob/issues",
      "Imports": [
        "methods",
        "rlang",
        "vctrs (>= 0.2.1)"
      ],
      "Suggests": [
        "covr",
        "crayon",
        "pillar (>= 1.2.1)",
        "testthat"
      ],
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "false",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Kirill Müller [cre], RStudio [cph, fnd]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "boot": {
      "Package": "boot",
      "Version": "1.3-31",
      "Source": "Repository",
      "Priority": "recommended",
      "Date": "2024-08-28",
      "Authors@R": "c(person(\"Angelo\", \"Canty\", role = \"aut\", email = \"cantya@mcmaster.ca\",  comment = \"author of original code for S\"), person(\"Brian\", \"Ripley\", role = c(\"aut\", \"trl\"), email = \"ripley@stats.ox.ac.uk\", comment = \"conversion to R, maintainer 1999--2022, author of parallel support\"), person(\"Alessandra R.\", \"Brazzale\", role = c(\"ctb\", \"cre\"), email = \"brazzale@stat.unipd.it\", comment = \"minor bug fixes\"))",
      "Maintainer": "Alessandra R. Brazzale <brazzale@stat.unipd.it>",
      "Note": "Maintainers are not available to give advice on using a package they did not author.",
      "Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and  D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.",
      "Title": "Bootstrap Functions (Originally by Angelo Canty for S)",
      "Depends": [
        "R (>= 3.0.0)",
        "graphics",
        "stats"
      ],
      "Suggests": [
        "MASS",
        "survival"
      ],
      "LazyData": "yes",
      "ByteCompile": "yes",
      "License": "Unlimited",
      "NeedsCompilation": "no",
      "Author": "Angelo Canty [aut] (author of original code for S), Brian Ripley [aut, trl] (conversion to R, maintainer 1999--2022, author of parallel support), Alessandra R. Brazzale [ctb, cre] (minor bug fixes)",
      "Repository": "CRAN"
    },
    "brew": {
      "Package": "brew",
      "Version": "1.0-10",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Templating Framework for Report Generation",
      "Authors@R": "c( person(\"Jeffrey\", \"Horner\", role = c(\"aut\", \"cph\")), person(\"Greg\", \"Hunt\", , \"greg@firmansyah.com\", role = c(\"aut\", \"cre\", \"cph\")) )",
      "Description": "Implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/gregfrog/brew",
      "BugReports": "https://github.com/gregfrog/brew/issues",
      "Suggests": [
        "testthat (>= 3.0.0)"
      ],
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Repository": "CRAN",
      "NeedsCompilation": "no",
      "Author": "Jeffrey Horner [aut, cph], Greg Hunt [aut, cre, cph]",
      "Maintainer": "Greg Hunt <greg@firmansyah.com>"
    },
    "brio": {
      "Package": "brio",
      "Version": "1.1.5",
      "Source": "Repository",
      "Title": "Basic R Input Output",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Functions to handle basic input output, these functions always read and write UTF-8 (8-bit Unicode Transformation Format) files and provide more explicit control over line endings.",
      "License": "MIT + file LICENSE",
      "URL": "https://brio.r-lib.org, https://github.com/r-lib/brio",
      "BugReports": "https://github.com/r-lib/brio/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Suggests": [
        "covr",
        "testthat (>= 3.0.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "broom": {
      "Package": "broom",
      "Version": "1.0.7",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Convert Statistical Objects into Tidy Tibbles",
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      "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.",
      "License": "MIT + file LICENSE",
      "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom",
      "BugReports": "https://github.com/tidymodels/broom/issues",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "backports",
        "dplyr (>= 1.0.0)",
        "generics (>= 0.0.2)",
        "glue",
        "lifecycle",
        "purrr",
        "rlang",
        "stringr",
        "tibble (>= 3.0.0)",
        "tidyr (>= 1.0.0)"
      ],
      "Suggests": [
        "AER",
        "AUC",
        "bbmle",
        "betareg (>= 3.2-1)",
        "biglm",
        "binGroup",
        "boot",
        "btergm (>= 1.10.6)",
        "car (>= 3.1-2)",
        "carData",
        "caret",
        "cluster",
        "cmprsk",
        "coda",
        "covr",
        "drc",
        "e1071",
        "emmeans",
        "epiR",
        "ergm (>= 3.10.4)",
        "fixest (>= 0.9.0)",
        "gam (>= 1.15)",
        "gee",
        "geepack",
        "ggplot2",
        "glmnet",
        "glmnetUtils",
        "gmm",
        "Hmisc",
        "irlba",
        "interp",
        "joineRML",
        "Kendall",
        "knitr",
        "ks",
        "Lahman",
        "lavaan (>= 0.6.18)",
        "leaps",
        "lfe",
        "lm.beta",
        "lme4",
        "lmodel2",
        "lmtest (>= 0.9.38)",
        "lsmeans",
        "maps",
        "margins",
        "MASS",
        "mclust",
        "mediation",
        "metafor",
        "mfx",
        "mgcv",
        "mlogit",
        "modeldata",
        "modeltests (>= 0.1.6)",
        "muhaz",
        "multcomp",
        "network",
        "nnet",
        "orcutt (>= 2.2)",
        "ordinal",
        "plm",
        "poLCA",
        "psych",
        "quantreg",
        "rmarkdown",
        "robust",
        "robustbase",
        "rsample",
        "sandwich",
        "spdep (>= 1.1)",
        "spatialreg",
        "speedglm",
        "spelling",
        "survey",
        "survival (>= 3.6-4)",
        "systemfit",
        "testthat (>= 2.1.0)",
        "tseries",
        "vars",
        "zoo"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "Language": "en-US",
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      "NeedsCompilation": "no",
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      "Maintainer": "Simon Couch <simon.couch@posit.co>",
      "Repository": "RSPM"
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      "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",
      "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )",
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      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/bslib/, https://github.com/rstudio/bslib",
      "BugReports": "https://github.com/rstudio/bslib/issues",
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        "htmltools (>= 0.5.8)",
        "jquerylib (>= 0.1.3)",
        "jsonlite",
        "lifecycle",
        "memoise (>= 2.0.1)",
        "mime",
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        "thematic",
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      "Config/Needs/routine": "chromote, desc, renv",
      "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'",
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], Garrick Aden-Buie [aut] (<https://orcid.org/0000-0002-7111-0077>), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)",
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      "Repository": "RSPM"
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      "Title": "Cache R Objects with Automatic Pruning",
      "Description": "Key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.",
      "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", c(\"aut\", \"cre\")), person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")))",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
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      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Winston Chang <winston@posit.co>",
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      "Description": "It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all.  This packages does exactly that.",
      "License": "MIT + file LICENSE",
      "URL": "https://callr.r-lib.org, https://github.com/r-lib/callr",
      "BugReports": "https://github.com/r-lib/callr/issues",
      "Depends": [
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        "utils"
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        "rprojroot",
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      "Config/Needs/website": "r-lib/asciicast, glue, htmlwidgets, igraph, tibble, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.3.1.9000",
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      "Author": "Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]",
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      "Repository": "CRAN"
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      "Version": "3.1-3",
      "Source": "Repository",
      "Date": "2024-09-23",
      "Title": "Companion to Applied Regression",
      "Authors@R": "c(person(\"John\", \"Fox\", role = c(\"aut\", \"cre\"), email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = \"aut\", email = \"brad.price@mail.wvu.edu\"), person(\"Daniel\", \"Adler\", role=\"ctb\"), person(\"Douglas\", \"Bates\", role = \"ctb\"), person(\"Gabriel\", \"Baud-Bovy\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role=\"ctb\"), person(\"Steve\", \"Ellison\", role=\"ctb\"), person(\"David\", \"Firth\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Gregor\", \"Gorjanc\", role = \"ctb\"), person(\"Spencer\", \"Graves\", role = \"ctb\"), person(\"Richard\", \"Heiberger\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person(\"Rafael\", \"Laboissiere\", role = \"ctb\"), person(\"Martin\", \"Maechler\", role=\"ctb\"), person(\"Georges\", \"Monette\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Henric\", \"Nilsson\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Brian\", \"Ripley\", role = \"ctb\"), person(\"Tom\", \"Short\", role=\"ctb\"), person(\"William\", \"Venables\", role = \"ctb\"), person(\"Steve\", \"Walker\", role=\"ctb\"), person(\"David\", \"Winsemius\", role=\"ctb\"), person(\"Achim\", \"Zeileis\", role = \"ctb\"), person(\"R-Core\", role=\"ctb\"))",
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        "carData (>= 3.0-0)"
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        "mgcv",
        "nnet",
        "pbkrtest (>= 0.4-4)",
        "quantreg",
        "grDevices",
        "utils",
        "stats",
        "graphics",
        "lme4 (>= 1.1-27.1)",
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      "Suggests": [
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        "ordinal",
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        "mvtnorm",
        "rgl (>= 0.111.3)",
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        "SparseM",
        "survival",
        "survey"
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      "ByteCompile": "yes",
      "LazyLoad": "yes",
      "Description": "Functions to Accompany J. Fox and S. Weisberg,  An R Companion to Applied Regression, Third Edition, Sage, 2019.",
      "License": "GPL (>= 2)",
      "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=car, https://www.john-fox.ca/Companion/index.html",
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      "NeedsCompilation": "no",
      "Author": "John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], Tom Short [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]",
      "Maintainer": "John Fox <jfox@mcmaster.ca>",
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      "Encoding": "UTF-8"
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      "Source": "Repository",
      "Date": "2022-01-05",
      "Title": "Companion to Applied Regression Data Sets",
      "Authors@R": "c(person(\"John\", \"Fox\", role = c(\"aut\", \"cre\"), email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = \"aut\", email = \"brad.price@mail.wvu.edu\"))",
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      "LazyLoad": "yes",
      "LazyData": "yes",
      "Description": "Datasets to Accompany J. Fox and S. Weisberg,  An R Companion to Applied Regression, Third Edition, Sage (2019).",
      "License": "GPL (>= 2)",
      "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=carData, https://socialsciences.mcmaster.ca/jfox/Books/Companion/index.html",
      "Author": "John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut]",
      "Maintainer": "John Fox <jfox@mcmaster.ca>",
      "Repository": "CRAN",
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      "Repository/R-Forge/DateTimeStamp": "2022-01-05 19:40:37",
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      "Source": "Repository",
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      "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@stat.ubc.ca\", c(\"cre\", \"aut\")), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", \"ctb\") )",
      "Description": "Helper functions to work with spreadsheets and the \"A1:D10\" style of cell range specification.",
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        "R (>= 3.0.0)"
      ],
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "URL": "https://github.com/rsheets/cellranger",
      "BugReports": "https://github.com/rsheets/cellranger/issues",
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      "RoxygenNote": "5.0.1.9000",
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        "tibble"
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      "NeedsCompilation": "no",
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      "Repository": "CRAN"
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      "Version": "3.6.4",
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      "Title": "Helpers for Developing Command Line Interfaces",
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      "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.",
      "License": "MIT + file LICENSE",
      "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli",
      "BugReports": "https://github.com/r-lib/cli/issues",
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        "knitr",
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        "rprojroot",
        "rstudioapi",
        "testthat (>= 3.2.0)",
        "tibble",
        "whoami",
        "withr"
      ],
      "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <gabor@posit.co>",
      "Repository": "RSPM"
    },
    "clipr": {
      "Package": "clipr",
      "Version": "0.8.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Read and Write from the System Clipboard",
      "Authors@R": "c( person(\"Matthew\", \"Lincoln\", , \"matthew.d.lincoln@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4387-3384\")), person(\"Louis\", \"Maddox\", role = \"ctb\"), person(\"Steve\", \"Simpson\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\") )",
      "Description": "Simple utility functions to read from and write to the Windows, OS X, and X11 clipboards.",
      "License": "GPL-3",
      "URL": "https://github.com/mdlincoln/clipr, http://matthewlincoln.net/clipr/",
      "BugReports": "https://github.com/mdlincoln/clipr/issues",
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rmarkdown",
        "rstudioapi (>= 0.5)",
        "testthat (>= 2.0.0)"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.1.2",
      "SystemRequirements": "xclip (https://github.com/astrand/xclip) or xsel (http://www.vergenet.net/~conrad/software/xsel/) for accessing the X11 clipboard, or wl-clipboard (https://github.com/bugaevc/wl-clipboard) for systems using Wayland.",
      "NeedsCompilation": "no",
      "Author": "Matthew Lincoln [aut, cre] (<https://orcid.org/0000-0002-4387-3384>), Louis Maddox [ctb], Steve Simpson [ctb], Jennifer Bryan [ctb]",
      "Maintainer": "Matthew Lincoln <matthew.d.lincoln@gmail.com>",
      "Repository": "CRAN"
    },
    "clusterProfiler": {
      "Package": "clusterProfiler",
      "Version": "4.10.1",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "A universal enrichment tool for interpreting omics data",
      "Authors@R": "c( person(given = \"Guangchuang\", family = \"Yu\",        email = \"guangchuangyu@gmail.com\",   role  = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-6485-8781\")), person(given = \"Li-Gen\",      family = \"Wang\",      email = \"reeganwang020@gmail.com\",   role  = \"ctb\"), person(given = \"Erqiang\",     family = \"Hu\",        email = \"woshihuerqiang@qq.com\",     role = \"ctb\"), person(given = \"Xiao\",        family = \"Luo\",       email = \"l77880853349@163.com\",      role  = \"ctb\"), person(given = \"Meijun\",      family = \"Chen\",      email = \"mjchen1996@outlook.com\",    role  = \"ctb\"), person(given = \"Giovanni\",    family = \"Dall'Olio\", email = \"giovanni.dallolio@upf.edu\", role = \"ctb\"), person(given = \"Wanqian\",     family = \"Wei\",       email = \"altair_wei@outlook.com\",    role = \"ctb\"), person(given = \"Chun-Hui\",    family = \"Gao\",       email = \"gaospecial@gmail.com\",      role = \"ctb\", comment = c(ORCID = \"0000-0002-1445-7939\")) )",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Description": "This package supports functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a univeral interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation. Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions.",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "AnnotationDbi",
        "downloader",
        "DOSE (>= 3.23.2)",
        "dplyr",
        "enrichplot (>= 1.9.3)",
        "GO.db",
        "GOSemSim (>= 2.27.2)",
        "gson (>= 0.0.7)",
        "httr",
        "igraph",
        "magrittr",
        "methods",
        "plyr",
        "qvalue",
        "rlang",
        "stats",
        "tidyr",
        "utils",
        "yulab.utils (>= 0.0.7)"
      ],
      "Suggests": [
        "AnnotationHub",
        "knitr",
        "jsonlite",
        "readr",
        "rmarkdown",
        "org.Hs.eg.db",
        "prettydoc",
        "BiocManager",
        "testthat"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "License": "Artistic-2.0",
      "URL": "https://yulab-smu.top/biomedical-knowledge-mining-book/ (docs), https://doi.org/10.1016/j.xinn.2021.100141 (paper)",
      "BugReports": "https://github.com/GuangchuangYu/clusterProfiler/issues",
      "biocViews": "Annotation, Clustering, GeneSetEnrichment, GO, KEGG, MultipleComparison, Pathways, Reactome, Visualization",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "git_url": "https://git.bioconductor.org/packages/clusterProfiler",
      "git_branch": "RELEASE_3_18",
      "git_last_commit": "072a273",
      "git_last_commit_date": "2024-03-07",
      "Repository": "Bioconductor 3.18",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Li-Gen Wang [ctb], Erqiang Hu [ctb], Xiao Luo [ctb], Meijun Chen [ctb], Giovanni Dall'Olio [ctb], Wanqian Wei [ctb], Chun-Hui Gao [ctb] (<https://orcid.org/0000-0002-1445-7939>)"
    },
    "codetools": {
      "Package": "codetools",
      "Version": "0.2-20",
      "Source": "Repository",
      "Priority": "recommended",
      "Author": "Luke Tierney <luke-tierney@uiowa.edu>",
      "Description": "Code analysis tools for R.",
      "Title": "Code Analysis Tools for R",
      "Depends": [
        "R (>= 2.1)"
      ],
      "Maintainer": "Luke Tierney <luke-tierney@uiowa.edu>",
      "URL": "https://gitlab.com/luke-tierney/codetools",
      "License": "GPL",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "colorspace": {
      "Package": "colorspace",
      "Version": "2.1-1",
      "Source": "Repository",
      "Date": "2024-07-26",
      "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes",
      "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))",
      "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>).",
      "Depends": [
        "R (>= 3.0.0)",
        "methods"
      ],
      "Imports": [
        "graphics",
        "grDevices",
        "stats"
      ],
      "Suggests": [
        "datasets",
        "utils",
        "KernSmooth",
        "MASS",
        "kernlab",
        "mvtnorm",
        "vcd",
        "tcltk",
        "shiny",
        "shinyjs",
        "ggplot2",
        "dplyr",
        "scales",
        "grid",
        "png",
        "jpeg",
        "knitr",
        "rmarkdown",
        "RColorBrewer",
        "rcartocolor",
        "scico",
        "viridis",
        "wesanderson"
      ],
      "VignetteBuilder": "knitr",
      "License": "BSD_3_clause + file LICENSE",
      "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/",
      "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html",
      "LazyData": "yes",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "Ross Ihaka [aut], Paul Murrell [aut] (<https://orcid.org/0000-0002-3224-8858>), Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Jason C. Fisher [aut] (<https://orcid.org/0000-0001-9032-8912>), Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>), Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Claire D. McWhite [aut] (<https://orcid.org/0000-0001-7346-3047>), Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>)",
      "Maintainer": "Achim Zeileis <Achim.Zeileis@R-project.org>",
      "Repository": "CRAN"
    },
    "colourpicker": {
      "Package": "colourpicker",
      "Version": "1.3.0",
      "Source": "Repository",
      "Title": "A Colour Picker Tool for Shiny and for Selecting Colours in Plots",
      "Authors@R": "c( person(\"Dean\", \"Attali\",  email = \"daattali@gmail.com\", role = c(\"aut\", \"cre\"), comment= c(ORCID=\"0000-0002-5645-3493\")), person(\"David\", \"Griswold\", email=\"novachild@gmail.com\", role = \"ctb\") )",
      "Description": "A colour picker that can be used as an input in 'Shiny' apps or Rmarkdown documents. The colour picker supports alpha opacity, custom colour palettes, and many more options. A Plot Colour Helper tool is available as an 'RStudio' Addin, which helps you pick colours to use in your plots. A more generic Colour Picker 'RStudio' Addin is also provided to let  you select colours to use in your R code.",
      "URL": "https://github.com/daattali/colourpicker, https://daattali.com/shiny/colourInput/",
      "BugReports": "https://github.com/daattali/colourpicker/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "ggplot2",
        "htmltools",
        "htmlwidgets (>= 0.7)",
        "jsonlite",
        "miniUI (>= 0.1.1)",
        "shiny (>= 0.11.1)",
        "shinyjs (>= 2.0.0)",
        "utils"
      ],
      "Suggests": [
        "knitr (>= 1.7)",
        "rmarkdown",
        "rstudioapi (>= 0.5)",
        "shinydisconnect"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Dean Attali [aut, cre] (<https://orcid.org/0000-0002-5645-3493>), David Griswold [ctb]",
      "Maintainer": "Dean Attali <daattali@gmail.com>",
      "Repository": "CRAN"
    },
    "commonmark": {
      "Package": "commonmark",
      "Version": "1.9.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "High Performance CommonMark and Github Markdown Rendering in R",
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", ,\"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"John MacFarlane\", role = \"cph\", comment = \"Author of cmark\"))",
      "Description": "The CommonMark specification <https://github.github.com/gfm/> defines a rationalized version of markdown syntax. This package uses the 'cmark'  reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. Also includes opt-in support for GFM extensions including tables, autolinks, and strikethrough text.",
      "License": "BSD_2_clause + file LICENSE",
      "URL": "https://docs.ropensci.org/commonmark/ https://ropensci.r-universe.dev/commonmark",
      "BugReports": "https://github.com/r-lib/commonmark/issues",
      "Suggests": [
        "curl",
        "testthat",
        "xml2"
      ],
      "RoxygenNote": "7.3.2",
      "Language": "en-US",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), John MacFarlane [cph] (Author of cmark)",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "RSPM"
    },
    "conflicted": {
      "Package": "conflicted",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "An Alternative Conflict Resolution Strategy",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "R's default conflict management system gives the most recently loaded package precedence. This can make it hard to detect conflicts, particularly when they arise because a package update creates ambiguity that did not previously exist. 'conflicted' takes a different approach, making every conflict an error and forcing you to choose which function to use.",
      "License": "MIT + file LICENSE",
      "URL": "https://conflicted.r-lib.org/, https://github.com/r-lib/conflicted",
      "BugReports": "https://github.com/r-lib/conflicted/issues",
      "Depends": [
        "R (>= 3.2)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "memoise",
        "rlang (>= 1.0.0)"
      ],
      "Suggests": [
        "callr",
        "covr",
        "dplyr",
        "Matrix",
        "methods",
        "pkgload",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], RStudio [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "corrplot": {
      "Package": "corrplot",
      "Version": "0.95",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Visualization of a Correlation Matrix",
      "Date": "2024-10-14",
      "Authors@R": "c( person('Taiyun', 'Wei', email = 'weitaiyun@gmail.com', role = c('cre', 'aut')), person('Viliam', 'Simko', email = 'viliam.simko@gmail.com', role = 'aut'), person('Michael', 'Levy', email = 'michael.levy@healthcatalyst.com', role = 'ctb'), person('Yihui', 'Xie', email = 'xie@yihui.name', role = 'ctb'), person('Yan', 'Jin', email = 'jyfeather@gmail.com', role = 'ctb'), person('Jeff', 'Zemla', email = 'zemla@wisc.edu', role = 'ctb'), person('Moritz', 'Freidank', email = 'freidankm@googlemail.com', role = 'ctb'), person('Jun', 'Cai', email = 'cai-j12@mails.tsinghua.edu.cn', role = 'ctb'), person('Tomas', 'Protivinsky', email = 'tomas.protivinsky@gmail.com', role = 'ctb') )",
      "Maintainer": "Taiyun Wei <weitaiyun@gmail.com>",
      "Suggests": [
        "seriation",
        "knitr",
        "RColorBrewer",
        "rmarkdown",
        "magrittr",
        "prettydoc",
        "testthat"
      ],
      "Description": "Provides a visual exploratory tool on correlation matrix that supports automatic variable reordering to help detect hidden patterns among variables.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/taiyun/corrplot",
      "BugReports": "https://github.com/taiyun/corrplot/issues",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.2.1",
      "NeedsCompilation": "no",
      "Author": "Taiyun Wei [cre, aut], Viliam Simko [aut], Michael Levy [ctb], Yihui Xie [ctb], Yan Jin [ctb], Jeff Zemla [ctb], Moritz Freidank [ctb], Jun Cai [ctb], Tomas Protivinsky [ctb]",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
    },
    "cowplot": {
      "Package": "cowplot",
      "Version": "1.1.3",
      "Source": "Repository",
      "Title": "Streamlined Plot Theme and Plot Annotations for 'ggplot2'",
      "Authors@R": "person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\", \"cre\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") )",
      "Description": "Provides various features that help with creating publication-quality figures with 'ggplot2', such as a set of themes, functions to align plots and arrange them into complex compound figures, and functions that make it easy to annotate plots and or mix plots with images. The package was originally written for internal use in the Wilke lab, hence the name (Claus O. Wilke's plot package). It has also been used extensively in the book Fundamentals of Data Visualization.",
      "URL": "https://wilkelab.org/cowplot/",
      "BugReports": "https://github.com/wilkelab/cowplot/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "ggplot2 (>= 3.4.0)",
        "grid",
        "gtable",
        "grDevices",
        "methods",
        "rlang",
        "scales"
      ],
      "License": "GPL-2",
      "Suggests": [
        "Cairo",
        "covr",
        "dplyr",
        "forcats",
        "gridGraphics (>= 0.4-0)",
        "knitr",
        "lattice",
        "magick",
        "maps",
        "PASWR",
        "patchwork",
        "rmarkdown",
        "ragg",
        "testthat (>= 1.0.0)",
        "tidyr",
        "vdiffr (>= 0.3.0)",
        "VennDiagram"
      ],
      "VignetteBuilder": "knitr",
      "Collate": "'add_sub.R' 'align_plots.R' 'as_grob.R' 'as_gtable.R' 'axis_canvas.R' 'cowplot.R' 'draw.R' 'get_plot_component.R' 'get_axes.R' 'get_titles.R' 'get_legend.R' 'get_panel.R' 'gtable.R' 'key_glyph.R' 'plot_grid.R' 'save.R' 'set_null_device.R' 'setup.R' 'stamp.R' 'themes.R' 'utils_ggplot2.R'",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>)",
      "Maintainer": "Claus O. Wilke <wilke@austin.utexas.edu>",
      "Repository": "CRAN"
    },
    "cpp11": {
      "Package": "cpp11",
      "Version": "0.5.2",
      "Source": "Repository",
      "Title": "A C++11 Interface for R's C Interface",
      "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a header only, C++11 interface to R's C interface.  Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.",
      "License": "MIT + file LICENSE",
      "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11",
      "BugReports": "https://github.com/r-lib/cpp11/issues",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Suggests": [
        "bench",
        "brio",
        "callr",
        "cli",
        "covr",
        "decor",
        "desc",
        "ggplot2",
        "glue",
        "knitr",
        "lobstr",
        "mockery",
        "progress",
        "rmarkdown",
        "scales",
        "Rcpp",
        "testthat (>= 3.2.0)",
        "tibble",
        "utils",
        "vctrs",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Davis Vaughan [aut, cre] (<https://orcid.org/0000-0003-4777-038X>), Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "CRAN"
    },
    "crayon": {
      "Package": "crayon",
      "Version": "1.5.3",
      "Source": "Repository",
      "Title": "Colored Terminal Output",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects.  Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily.  This package was inspired by the 'chalk' 'JavaScript' project.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon",
      "BugReports": "https://github.com/r-lib/crayon/issues",
      "Imports": [
        "grDevices",
        "methods",
        "utils"
      ],
      "Suggests": [
        "mockery",
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      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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      "Type": "Package",
      "Title": "Tools for Managing SSH and Git Credentials",
      "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"),  email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))",
      "Description": "Setup and retrieve HTTPS and SSH credentials for use with 'git' and  other services. For HTTPS remotes the package interfaces the 'git-credential'  utility which 'git' uses to store HTTP usernames and passwords. For SSH  remotes we provide convenient functions to find or generate appropriate SSH  keys. The package both helps the user to setup a local git installation, and also provides a back-end for git/ssh client libraries to authenticate with  existing user credentials.",
      "License": "MIT + file LICENSE",
      "SystemRequirements": "git (optional)",
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        "sys (>= 2.1)",
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      "BugReports": "https://github.com/r-lib/credentials/issues",
      "NeedsCompilation": "no",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "RSPM"
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      "Title": "Inter-Widget Interactivity for HTML Widgets",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(family = \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )",
      "Description": "Provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). Currently supports linked brushing and filtering.",
      "License": "MIT + file LICENSE",
      "Imports": [
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        "jsonlite",
        "lazyeval",
        "R6"
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      "Suggests": [
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      "BugReports": "https://github.com/rstudio/crosstalk/issues",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)",
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      "Repository": "CRAN"
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      "Source": "Repository",
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      "Title": "A Modern and Flexible Web Client for R",
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      "Description": "Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the  'httr2' package which builds on this package with http specific tools and logic.",
      "License": "MIT + file LICENSE",
      "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)",
      "URL": "https://jeroen.r-universe.dev/curl",
      "BugReports": "https://github.com/jeroen/curl/issues",
      "Suggests": [
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      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Hadley Wickham [ctb], Posit Software, PBC [cph]",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "RSPM"
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      "Version": "1.17.0",
      "Source": "Repository",
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      "Imports": [
        "methods"
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      "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.",
      "License": "MPL-2.0 | file LICENSE",
      "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table",
      "BugReports": "https://github.com/Rdatatable/data.table/issues",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
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      "Authors@R": "c( person(\"Tyson\",\"Barrett\",        role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\",           role=\"aut\",          email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\",      role=\"aut\",          email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\",          role=\"aut\"), person(\"Michael\",\"Chirico\",      role=\"aut\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\",         role=\"aut\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\",         role=\"aut\",          email=\"ikrylov@disroot.org\",   comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\",      role=\"ctb\"), person(\"Tom\",\"Short\",            role=\"ctb\"), person(\"Steve\",\"Lianoglou\",      role=\"ctb\"), person(\"Eduard\",\"Antonyan\",      role=\"ctb\"), person(\"Markus\",\"Bonsch\",        role=\"ctb\"), person(\"Hugh\",\"Parsonage\",       role=\"ctb\"), person(\"Scott\",\"Ritchie\",        role=\"ctb\"), person(\"Kun\",\"Ren\",              role=\"ctb\"), person(\"Xianying\",\"Tan\",         role=\"ctb\"), person(\"Rick\",\"Saporta\",         role=\"ctb\"), person(\"Otto\",\"Seiskari\",        role=\"ctb\"), person(\"Xianghui\",\"Dong\",        role=\"ctb\"), person(\"Michel\",\"Lang\",          role=\"ctb\"), person(\"Watal\",\"Iwasaki\",        role=\"ctb\"), person(\"Seth\",\"Wenchel\",         role=\"ctb\"), person(\"Karl\",\"Broman\",          role=\"ctb\"), person(\"Tobias\",\"Schmidt\",       role=\"ctb\"), person(\"David\",\"Arenburg\",       role=\"ctb\"), person(\"Ethan\",\"Smith\",          role=\"ctb\"), person(\"Francois\",\"Cocquemas\",   role=\"ctb\"), person(\"Matthieu\",\"Gomez\",       role=\"ctb\"), person(\"Philippe\",\"Chataignon\",  role=\"ctb\"), person(\"Nello\",\"Blaser\",         role=\"ctb\"), person(\"Dmitry\",\"Selivanov\",     role=\"ctb\"), person(\"Andrey\",\"Riabushenko\",   role=\"ctb\"), person(\"Cheng\",\"Lee\",            role=\"ctb\"), person(\"Declan\",\"Groves\",        role=\"ctb\"), person(\"Daniel\",\"Possenriede\",   role=\"ctb\"), person(\"Felipe\",\"Parages\",       role=\"ctb\"), person(\"Denes\",\"Toth\",           role=\"ctb\"), person(\"Mus\",\"Yaramaz-David\",    role=\"ctb\"), person(\"Ayappan\",\"Perumal\",      role=\"ctb\"), person(\"James\",\"Sams\",           role=\"ctb\"), person(\"Martin\",\"Morgan\",        role=\"ctb\"), person(\"Michael\",\"Quinn\",        role=\"ctb\"), person(\"@javrucebo\",\"\",          role=\"ctb\"), person(\"@marc-outins\",\"\",        role=\"ctb\"), person(\"Roy\",\"Storey\",           role=\"ctb\"), person(\"Manish\",\"Saraswat\",      role=\"ctb\"), person(\"Morgan\",\"Jacob\",         role=\"ctb\"), person(\"Michael\",\"Schubmehl\",    role=\"ctb\"), person(\"Davis\",\"Vaughan\",        role=\"ctb\"), person(\"Leonardo\",\"Silvestri\",   role=\"ctb\"), person(\"Jim\",\"Hester\",           role=\"ctb\"), person(\"Anthony\",\"Damico\",       role=\"ctb\"), person(\"Sebastian\",\"Freundt\",    role=\"ctb\"), person(\"David\",\"Simons\",         role=\"ctb\"), person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\",          role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\",        role=\"ctb\"), person(\"Kevin\",\"Ushey\",          role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\",    role=\"ctb\"), person(\"Tony\",\"Fischetti\",       role=\"ctb\"), person(\"Ofek\",\"Shilon\",          role=\"ctb\"), person(\"Vadim\",\"Khotilovich\",    role=\"ctb\"), person(\"Hadley\",\"Wickham\",       role=\"ctb\"), person(\"Bennet\",\"Becker\",        role=\"ctb\"), person(\"Kyle\",\"Haynes\",          role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\",   role=\"ctb\"), person(\"Josh\",\"O'Brien\",         role=\"ctb\"), person(\"Dereck\",\"de Mezquita\",   role=\"ctb\"), person(\"Michael\",\"Czekanski\",    role=\"ctb\"), person(\"Dmitry\", \"Shemetov\",     role=\"ctb\"), person(\"Nitish\", \"Jha\",          role=\"ctb\"), person(\"Joshua\", \"Wu\",           role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\",   role=\"ctb\"), person(\"Anirban\", \"Chetia\",      role=\"ctb\"), person(\"Doris\", \"Amoakohene\",    role=\"ctb\"), person(\"Angel\", \"Feliz\",         role=\"ctb\"), person(\"Michael\",\"Young\",        role=\"ctb\"), person(\"Mark\", \"Seeto\",          role=\"ctb\"), person(\"Philippe\", \"Grosjean\",   role=\"ctb\"), person(\"Vincent\", \"Runge\",       role=\"ctb\"), person(\"Christian\", \"Wia\",       role=\"ctb\"), person(\"Elise\", \"Maigné\",        role=\"ctb\"), person(\"Vincent\", \"Rocher\",      role=\"ctb\"), person(\"Vijay\", \"Lulla\",         role=\"ctb\"), person(\"Aljaž\", \"Sluga\",         role=\"ctb\"), person(\"Bill\", \"Evans\",          role=\"ctb\") )",
      "NeedsCompilation": "yes",
      "Author": "Tyson Barrett [aut, cre] (<https://orcid.org/0000-0002-2137-1391>), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (<https://orcid.org/0000-0003-0787-087X>), Toby Hocking [aut] (<https://orcid.org/0000-0002-3146-0865>), Benjamin Schwendinger [aut] (<https://orcid.org/0000-0003-3315-8114>), Ivan Krylov [aut] (<https://orcid.org/0000-0002-0172-3812>), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb], @marc-outins [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb]",
      "Maintainer": "Tyson Barrett <t.barrett88@gmail.com>",
      "Repository": "RSPM"
    },
    "dbplyr": {
      "Package": "dbplyr",
      "Version": "2.5.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A 'dplyr' Back End for Databases",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Edgar\", \"Ruiz\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames.  Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.",
      "License": "MIT + file LICENSE",
      "URL": "https://dbplyr.tidyverse.org/, https://github.com/tidyverse/dbplyr",
      "BugReports": "https://github.com/tidyverse/dbplyr/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
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        "lifecycle (>= 1.0.3)",
        "magrittr",
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        "purrr (>= 1.0.1)",
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        "Lahman",
        "nycflights13",
        "odbc (>= 1.4.2)",
        "RMariaDB (>= 1.2.2)",
        "rmarkdown",
        "RPostgres (>= 1.4.5)",
        "RPostgreSQL",
        "RSQLite (>= 2.3.1)",
        "testthat (>= 3.1.10)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Encoding": "UTF-8",
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      "Collate": "'db-sql.R' 'utils-check.R' 'import-standalone-types-check.R' 'import-standalone-obj-type.R' 'utils.R' 'sql.R' 'escape.R' 'translate-sql-cut.R' 'translate-sql-quantile.R' 'translate-sql-string.R' 'translate-sql-paste.R' 'translate-sql-helpers.R' 'translate-sql-window.R' 'translate-sql-conditional.R' 'backend-.R' 'backend-access.R' 'backend-hana.R' 'backend-hive.R' 'backend-impala.R' 'verb-copy-to.R' 'backend-mssql.R' 'backend-mysql.R' 'backend-odbc.R' 'backend-oracle.R' 'backend-postgres.R' 'backend-postgres-old.R' 'backend-redshift.R' 'backend-snowflake.R' 'backend-spark-sql.R' 'backend-sqlite.R' 'backend-teradata.R' 'build-sql.R' 'data-cache.R' 'data-lahman.R' 'data-nycflights13.R' 'db-escape.R' 'db-io.R' 'db.R' 'dbplyr.R' 'explain.R' 'ident.R' 'import-standalone-s3-register.R' 'join-by-compat.R' 'join-cols-compat.R' 'lazy-join-query.R' 'lazy-ops.R' 'lazy-query.R' 'lazy-select-query.R' 'lazy-set-op-query.R' 'memdb.R' 'optimise-utils.R' 'pillar.R' 'progress.R' 'sql-build.R' 'query-join.R' 'query-select.R' 'query-semi-join.R' 'query-set-op.R' 'query.R' 'reexport.R' 'remote.R' 'rows.R' 'schema.R' 'simulate.R' 'sql-clause.R' 'sql-expr.R' 'src-sql.R' 'src_dbi.R' 'table-name.R' 'tbl-lazy.R' 'tbl-sql.R' 'test-frame.R' 'testthat.R' 'tidyeval-across.R' 'tidyeval.R' 'translate-sql.R' 'utils-format.R' 'verb-arrange.R' 'verb-compute.R' 'verb-count.R' 'verb-distinct.R' 'verb-do-query.R' 'verb-do.R' 'verb-expand.R' 'verb-fill.R' 'verb-filter.R' 'verb-group_by.R' 'verb-head.R' 'verb-joins.R' 'verb-mutate.R' 'verb-pivot-longer.R' 'verb-pivot-wider.R' 'verb-pull.R' 'verb-select.R' 'verb-set-ops.R' 'verb-slice.R' 'verb-summarise.R' 'verb-uncount.R' 'verb-window.R' 'zzz.R'",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Maximilian Girlich [aut], Edgar Ruiz [aut], Posit Software, PBC [cph, fnd]",
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      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Tools to read, write, create, and manipulate DESCRIPTION files.  It is intended for packages that create or manipulate other packages.",
      "License": "MIT + file LICENSE",
      "URL": "https://desc.r-lib.org/, https://github.com/r-lib/desc",
      "BugReports": "https://github.com/r-lib/desc/issues",
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      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Kirill Müller [aut], Jim Hester [aut], Maëlle Salmon [ctb] (<https://orcid.org/0000-0002-2815-0399>), Posit Software, PBC [cph, fnd]",
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      "Source": "Repository",
      "Title": "Tools to Make Developing R Packages Easier",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", , \"jenny@rstudio.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Collection of package development tools.",
      "License": "MIT + file LICENSE",
      "URL": "https://devtools.r-lib.org/, https://github.com/r-lib/devtools",
      "BugReports": "https://github.com/r-lib/devtools/issues",
      "Depends": [
        "R (>= 3.0.2)",
        "usethis (>= 2.1.6)"
      ],
      "Imports": [
        "cli (>= 3.3.0)",
        "desc (>= 1.4.1)",
        "ellipsis (>= 0.3.2)",
        "fs (>= 1.5.2)",
        "lifecycle (>= 1.0.1)",
        "memoise (>= 2.0.1)",
        "miniUI (>= 0.1.1.1)",
        "pkgbuild (>= 1.3.1)",
        "pkgdown (>= 2.0.6)",
        "pkgload (>= 1.3.0)",
        "profvis (>= 0.3.7)",
        "rcmdcheck (>= 1.4.0)",
        "remotes (>= 2.4.2)",
        "rlang (>= 1.0.4)",
        "roxygen2 (>= 7.2.1)",
        "rversions (>= 2.1.1)",
        "sessioninfo (>= 1.2.2)",
        "stats",
        "testthat (>= 3.1.5)",
        "tools",
        "urlchecker (>= 1.0.1)",
        "utils",
        "withr (>= 2.5.0)"
      ],
      "Suggests": [
        "BiocManager (>= 1.30.18)",
        "callr (>= 3.7.1)",
        "covr (>= 3.5.1)",
        "curl (>= 4.3.2)",
        "digest (>= 0.6.29)",
        "DT (>= 0.23)",
        "foghorn (>= 1.4.2)",
        "gh (>= 1.3.0)",
        "gmailr (>= 1.0.1)",
        "httr (>= 1.4.3)",
        "knitr (>= 1.39)",
        "lintr (>= 3.0.0)",
        "MASS",
        "mockery (>= 0.4.3)",
        "pingr (>= 2.0.1)",
        "rhub (>= 1.1.1)",
        "rmarkdown (>= 2.14)",
        "rstudioapi (>= 0.13)",
        "spelling (>= 2.2)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.1",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut], Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), RStudio [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@rstudio.com>",
      "Repository": "CRAN"
    },
    "diffobj": {
      "Package": "diffobj",
      "Version": "0.3.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Diffs for R Objects",
      "Description": "Generate a colorized diff of two R objects for an intuitive visualization of their differences.",
      "Authors@R": "c( person( \"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person( \"Michael B.\", \"Allen\", email=\"ioplex@gmail.com\", role=c(\"ctb\", \"cph\"), comment=\"Original C implementation of Myers Diff Algorithm\"))",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "License": "GPL-2 | GPL-3",
      "URL": "https://github.com/brodieG/diffobj",
      "BugReports": "https://github.com/brodieG/diffobj/issues",
      "RoxygenNote": "7.1.1",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "Suggests": [
        "knitr",
        "rmarkdown"
      ],
      "Collate": "'capt.R' 'options.R' 'pager.R' 'check.R' 'finalizer.R' 'misc.R' 'html.R' 'styles.R' 's4.R' 'core.R' 'diff.R' 'get.R' 'guides.R' 'hunks.R' 'layout.R' 'myerssimple.R' 'rdiff.R' 'rds.R' 'set.R' 'subset.R' 'summmary.R' 'system.R' 'text.R' 'tochar.R' 'trim.R' 'word.R'",
      "Imports": [
        "crayon (>= 1.3.2)",
        "tools",
        "methods",
        "utils",
        "stats"
      ],
      "NeedsCompilation": "yes",
      "Author": "Brodie Gaslam [aut, cre], Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff Algorithm)",
      "Maintainer": "Brodie Gaslam <brodie.gaslam@yahoo.com>",
      "Repository": "CRAN"
    },
    "digest": {
      "Package": "digest",
      "Version": "0.6.37",
      "Source": "Repository",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\"), person(\"Ion\", \"Suruceanu\", role=\"ctb\"), person(\"Bill\", \"Denney\", role=\"ctb\"), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\"), person(\"Sergey\", \"Fedorov\", role=\"ctb\"), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\"), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\"))",
      "Date": "2024-08-19",
      "Title": "Create Compact Hash Digests of R Objects",
      "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.",
      "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html",
      "BugReports": "https://github.com/eddelbuettel/digest/issues",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "utils"
      ],
      "License": "GPL (>= 2)",
      "Suggests": [
        "tinytest",
        "simplermarkdown"
      ],
      "VignetteBuilder": "simplermarkdown",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (<https://orcid.org/0000-0002-7579-5165>), Simon Urbanek [ctb] (<https://orcid.org/0000-0003-2297-1732>), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (<https://orcid.org/0000-0001-5180-0567>), Qiang Kou [ctb] (<https://orcid.org/0000-0001-6786-5453>), Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>), Michel Lang [ctb] (<https://orcid.org/0000-0001-9754-0393>), Viliam Simko [ctb], Kurt Hornik [ctb] (<https://orcid.org/0000-0003-4198-9911>), Radford Neal [ctb] (<https://orcid.org/0000-0002-2473-3407>), Kendon Bell [ctb] (<https://orcid.org/0000-0002-9093-8312>), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (<https://orcid.org/0000-0003-1878-3253>), Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (<https://orcid.org/0000-0001-7813-818X>), Mark van der Loo [ctb] (<https://orcid.org/0000-0002-9807-4686>), Chris Muir [ctb] (<https://orcid.org/0000-0003-2555-3878>), Moritz Beller [ctb] (<https://orcid.org/0000-0003-4852-0526>), Sebastian Campbell [ctb], Winston Chang [ctb] (<https://orcid.org/0000-0002-1576-2126>), Dean Attali [ctb] (<https://orcid.org/0000-0002-5645-3493>), Michael Chirico [ctb] (<https://orcid.org/0000-0003-0787-087X>), Kevin Ushey [ctb]",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "doBy": {
      "Package": "doBy",
      "Version": "4.6.25",
      "Source": "Repository",
      "Title": "Groupwise Statistics, LSmeans, Linear Estimates, Utilities",
      "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )",
      "Maintainer": "Søren Højsgaard <sorenh@math.aau.dk>",
      "Description": "Utility package containing: 1) Facilities for working with grouped data: 'do' something to data stratified 'by' some variables. 2) LSmeans (least-squares means), general linear estimates. 3) Restrict functions to a smaller domain. 4) Miscellaneous other utilities.",
      "Encoding": "UTF-8",
      "VignetteBuilder": "knitr",
      "LazyData": "true",
      "LazyDataCompression": "xz",
      "URL": "https://github.com/hojsgaard/doBy",
      "License": "GPL (>= 2)",
      "Depends": [
        "R (>= 4.2.0)",
        "methods"
      ],
      "Imports": [
        "boot",
        "broom",
        "cowplot",
        "Deriv",
        "dplyr",
        "ggplot2",
        "MASS",
        "Matrix",
        "modelr",
        "microbenchmark",
        "rlang",
        "tibble",
        "tidyr"
      ],
      "Suggests": [
        "geepack",
        "knitr",
        "lme4",
        "markdown",
        "multcomp",
        "pbkrtest (>= 0.5.2)",
        "survival",
        "testthat (>= 2.1.0)"
      ],
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Ulrich Halekoh [aut, cph], Søren Højsgaard [aut, cre, cph]",
      "Repository": "RSPM"
    },
    "downlit": {
      "Package": "downlit",
      "Version": "0.4.4",
      "Source": "Repository",
      "Title": "Syntax Highlighting and Automatic Linking",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pkgdown', 'hugodown', and 'bookdown'. It includes linking of function calls to their documentation on the web, and automatic translation of ANSI escapes in output to the equivalent HTML.",
      "License": "MIT + file LICENSE",
      "URL": "https://downlit.r-lib.org/, https://github.com/r-lib/downlit",
      "BugReports": "https://github.com/r-lib/downlit/issues",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Imports": [
        "brio",
        "desc",
        "digest",
        "evaluate",
        "fansi",
        "memoise",
        "rlang",
        "vctrs",
        "withr",
        "yaml"
      ],
      "Suggests": [
        "covr",
        "htmltools",
        "jsonlite",
        "MASS",
        "MassSpecWavelet",
        "pkgload",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "xml2"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "downloader": {
      "Package": "downloader",
      "Version": "0.4.1",
      "Source": "Repository",
      "Maintainer": "Winston Chang <winston@stdout.org>",
      "Authors@R": "person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@stdout.org\")",
      "License": "GPL-2",
      "Title": "Download Files over HTTP and HTTPS",
      "Description": "Provides a wrapper for the download.file function, making it possible to download files over HTTPS on Windows, Mac OS X, and other Unix-like platforms. The 'RCurl' package provides this functionality (and much more) but can be difficult to install because it must be compiled with external dependencies. This package has no external dependencies, so it is much easier to install.",
      "URL": "https://github.com/wch/downloader",
      "Imports": [
        "utils",
        "digest"
      ],
      "Suggests": [
        "testthat"
      ],
      "BugReports": "https://github.com/wch/downloader/issues",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Winston Chang [aut, cre]",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "dplyr": {
      "Package": "dplyr",
      "Version": "1.1.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Grammar of Data Manipulation",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A fast, consistent tool for working with data frame like objects, both in memory and out of memory.",
      "License": "MIT + file LICENSE",
      "URL": "https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr",
      "BugReports": "https://github.com/tidyverse/dplyr/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "generics",
        "glue (>= 1.3.2)",
        "lifecycle (>= 1.0.3)",
        "magrittr (>= 1.5)",
        "methods",
        "pillar (>= 1.9.0)",
        "R6",
        "rlang (>= 1.1.0)",
        "tibble (>= 3.2.0)",
        "tidyselect (>= 1.2.0)",
        "utils",
        "vctrs (>= 0.6.4)"
      ],
      "Suggests": [
        "bench",
        "broom",
        "callr",
        "covr",
        "DBI",
        "dbplyr (>= 2.2.1)",
        "ggplot2",
        "knitr",
        "Lahman",
        "lobstr",
        "microbenchmark",
        "nycflights13",
        "purrr",
        "rmarkdown",
        "RMySQL",
        "RPostgreSQL",
        "RSQLite",
        "stringi (>= 1.7.6)",
        "testthat (>= 3.1.5)",
        "tidyr (>= 1.3.0)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse, shiny, pkgdown, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Lionel Henry [aut], Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>), Davis Vaughan [aut] (<https://orcid.org/0000-0003-4777-038X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "dtplyr": {
      "Package": "dtplyr",
      "Version": "1.3.1",
      "Source": "Repository",
      "Title": "Data Table Back-End for 'dplyr'",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"cre\", \"aut\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Mark\", \"Fairbanks\", role = \"aut\"), person(\"Ryan\", \"Dickerson\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a data.table backend for 'dplyr'. The goal of 'dtplyr' is to allow you to write 'dplyr' code that is automatically translated to the equivalent, but usually much faster, data.table code.",
      "License": "MIT + file LICENSE",
      "URL": "https://dtplyr.tidyverse.org, https://github.com/tidyverse/dtplyr",
      "BugReports": "https://github.com/tidyverse/dtplyr/issues",
      "Depends": [
        "R (>= 3.3)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "data.table (>= 1.13.0)",
        "dplyr (>= 1.1.0)",
        "glue",
        "lifecycle",
        "rlang (>= 1.0.4)",
        "tibble",
        "tidyselect (>= 1.2.0)",
        "vctrs (>= 0.4.1)"
      ],
      "Suggests": [
        "bench",
        "covr",
        "knitr",
        "rmarkdown",
        "testthat (>= 3.1.2)",
        "tidyr (>= 1.1.0)",
        "waldo (>= 0.3.1)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [cre, aut], Maximilian Girlich [aut], Mark Fairbanks [aut], Ryan Dickerson [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "ellipsis": {
      "Package": "ellipsis",
      "Version": "0.3.2",
      "Source": "Repository",
      "Title": "Tools for Working with ...",
      "Description": "The ellipsis is a powerful tool for extending functions. Unfortunately  this power comes at a cost: misspelled arguments will be silently ignored.  The ellipsis package provides a collection of functions to catch problems and alert the user.",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "URL": "https://ellipsis.r-lib.org, https://github.com/r-lib/ellipsis",
      "BugReports": "https://github.com/r-lib/ellipsis/issues",
      "Depends": [
        "R (>= 3.2)"
      ],
      "Imports": [
        "rlang (>= 0.3.0)"
      ],
      "Suggests": [
        "covr",
        "testthat"
      ],
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre], RStudio [cph]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "emmeans": {
      "Package": "emmeans",
      "Version": "1.11.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Estimated Marginal Means, aka Least-Squares Means",
      "Date": "2025-03-19",
      "Authors@R": "c(person(\"Russell V.\", \"Lenth\", role = c(\"aut\", \"cre\", \"cph\"),  email = \"russell-lenth@uiowa.edu\"), person(\"Balazs\", \"Banfai\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role = \"ctb\"), person(\"Paul\", \"Buerkner\", role = \"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role = \"ctb\"), person(\"Maxime\", \"Herve\", role = \"ctb\"), person(\"Maarten\", \"Jung\", role = \"ctb\"), person(\"Jonathon\", \"Love\", role = \"ctb\"), person(\"Fernando\", \"Miguez\", role = \"ctb\"), person(\"Julia\", \"Piaskowski\", role = \"ctb\"), person(\"Hannes\", \"Riebl\", role = \"ctb\"), person(\"Henrik\", \"Singmann\", role = \"ctb\"))",
      "Depends": [
        "R (>= 4.1.0)"
      ],
      "Imports": [
        "estimability (>= 1.4.1)",
        "graphics",
        "methods",
        "numDeriv",
        "stats",
        "utils",
        "mvtnorm"
      ],
      "Suggests": [
        "bayesplot",
        "bayestestR",
        "biglm",
        "brms",
        "car",
        "coda (>= 0.17)",
        "compositions",
        "ggplot2",
        "lattice",
        "logspline",
        "mediation",
        "mgcv",
        "multcomp",
        "multcompView",
        "nlme",
        "ordinal (>= 2014.11-12)",
        "pbkrtest (>= 0.4-1)",
        "lme4",
        "lmerTest (>= 2.0.32)",
        "MASS",
        "MuMIn",
        "rsm",
        "knitr",
        "rmarkdown",
        "sandwich",
        "scales",
        "splines",
        "testthat",
        "tibble",
        "xtable (>= 1.8-2)"
      ],
      "Enhances": [
        "CARBayes",
        "coxme",
        "gee",
        "geepack",
        "MCMCglmm",
        "MCMCpack",
        "mice",
        "nnet",
        "pscl",
        "rstanarm",
        "sommer",
        "survival"
      ],
      "URL": "https://rvlenth.github.io/emmeans/,https://rvlenth.github.io/emmeans/",
      "BugReports": "https://github.com/rvlenth/emmeans/issues",
      "LazyData": "yes",
      "ByteCompile": "yes",
      "Description": "Obtain estimated marginal means (EMMs) for many linear, generalized  linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays. Least-squares means are discussed, and the term \"estimated marginal means\" is suggested, in Searle, Speed, and Milliken (1980) Population marginal means  in the linear model: An alternative to least squares means, The American  Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.",
      "License": "GPL-2 | GPL-3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "VignetteBuilder": "knitr",
      "NeedsCompilation": "no",
      "Author": "Russell V. Lenth [aut, cre, cph], Balazs Banfai [ctb], Ben Bolker [ctb], Paul Buerkner [ctb], Iago Giné-Vázquez [ctb], Maxime Herve [ctb], Maarten Jung [ctb], Jonathon Love [ctb], Fernando Miguez [ctb], Julia Piaskowski [ctb], Hannes Riebl [ctb], Henrik Singmann [ctb]",
      "Maintainer": "Russell V. Lenth <russell-lenth@uiowa.edu>",
      "Repository": "RSPM"
    },
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      "Package": "enrichplot",
      "Version": "1.22.0",
      "Source": "Bioconductor",
      "Title": "Visualization of Functional Enrichment Result",
      "Authors@R": "c( person(given = \"Guangchuang\", family = \"Yu\", email = \"guangchuangyu@gmail.com\",   role  = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6485-8781\")), person(given = \"Erqiang\",     family = \"Hu\", email = \"13766876214@163.com\",       role = \"ctb\", comment = c(ORCID = \"0000-0002-1798-7513\")), person(given = \"Chun-Hui\", family = \"Gao\", email = \"gaospecial@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1445-7939\")))",
      "Description": "The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "aplot (>= 0.2.1)",
        "DOSE (>= 3.16.0)",
        "ggfun (>= 0.1.3)",
        "ggnewscale",
        "ggplot2",
        "ggraph",
        "graphics",
        "grid",
        "igraph",
        "methods",
        "plyr",
        "purrr",
        "RColorBrewer",
        "reshape2",
        "rlang",
        "stats",
        "utils",
        "scatterpie",
        "shadowtext",
        "GOSemSim",
        "magrittr",
        "ggtree",
        "yulab.utils (>= 0.0.8)"
      ],
      "Suggests": [
        "clusterProfiler",
        "dplyr",
        "europepmc",
        "ggupset",
        "knitr",
        "rmarkdown",
        "org.Hs.eg.db",
        "prettydoc",
        "tibble",
        "tidyr",
        "ggforce",
        "AnnotationDbi",
        "ggplotify",
        "ggridges",
        "grDevices",
        "gridExtra",
        "ggrepel (>= 0.9.0)",
        "ggstar",
        "scales",
        "ggtreeExtra",
        "tidydr"
      ],
      "VignetteBuilder": "knitr",
      "License": "Artistic-2.0",
      "URL": "https://yulab-smu.top/biomedical-knowledge-mining-book/",
      "BugReports": "https://github.com/GuangchuangYu/enrichplot/issues",
      "biocViews": "Annotation, GeneSetEnrichment, GO, KEGG, Pathways, Software, Visualization",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "git_url": "https://git.bioconductor.org/packages/enrichplot",
      "git_branch": "RELEASE_3_18",
      "git_last_commit": "6277b76",
      "git_last_commit_date": "2023-10-24",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Erqiang Hu [ctb] (<https://orcid.org/0000-0002-1798-7513>), Chun-Hui Gao [ctb] (<https://orcid.org/0000-0002-1445-7939>)",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>"
    },
    "estimability": {
      "Package": "estimability",
      "Version": "1.5.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Tools for Assessing Estimability of Linear Predictions",
      "Date": "2024-05-12",
      "Authors@R": "c(person(\"Russell\", \"Lenth\", role = c(\"aut\", \"cre\", \"cph\"),  email = \"russell-lenth@uiowa.edu\"))",
      "Depends": [
        "stats",
        "R(>= 4.1.0)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown"
      ],
      "Description": "Provides tools for determining estimability of linear functions  of regression coefficients, and 'epredict' methods that handle  non-estimable cases correctly. Estimability theory is discussed in many linear-models textbooks including Chapter 3 of Monahan, JF (2008),  \"A Primer on Linear Models\", Chapman and Hall (ISBN 978-1-4200-6201-4).",
      "URL": "https://github.com/rvlenth/estimability, https://rvlenth.github.io/estimability/",
      "BugReports": "https://github.com/rvlenth/estimability/issues",
      "ByteCompile": "yes",
      "License": "GPL (>= 3)",
      "VignetteBuilder": "knitr",
      "NeedsCompilation": "no",
      "Author": "Russell Lenth [aut, cre, cph]",
      "Maintainer": "Russell Lenth <russell-lenth@uiowa.edu>",
      "Repository": "CRAN"
    },
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      "Version": "1.0.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Parsing and Evaluation Tools that Provide More Details than the Default",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"Koncevičius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.",
      "License": "MIT + file LICENSE",
      "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate",
      "BugReports": "https://github.com/r-lib/evaluate/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Suggests": [
        "callr",
        "covr",
        "ggplot2 (>= 3.3.6)",
        "lattice",
        "methods",
        "pkgload",
        "rlang",
        "knitr",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (<https://orcid.org/0000-0003-0645-5666>), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "RSPM"
    },
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      "Package": "fansi",
      "Version": "1.0.6",
      "Source": "Repository",
      "Title": "ANSI Control Sequence Aware String Functions",
      "Description": "Counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.",
      "Authors@R": "c( person(\"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person(\"Elliott\", \"Sales De Andrade\", role=\"ctb\"), person(family=\"R Core Team\", email=\"R-core@r-project.org\", role=\"cph\", comment=\"UTF8 byte length calcs from src/util.c\" ))",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "License": "GPL-2 | GPL-3",
      "URL": "https://github.com/brodieG/fansi",
      "BugReports": "https://github.com/brodieG/fansi/issues",
      "VignetteBuilder": "knitr",
      "Suggests": [
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        "knitr",
        "rmarkdown"
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      "Imports": [
        "grDevices",
        "utils"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "Collate": "'constants.R' 'fansi-package.R' 'internal.R' 'load.R' 'misc.R' 'nchar.R' 'strwrap.R' 'strtrim.R' 'strsplit.R' 'substr2.R' 'trimws.R' 'tohtml.R' 'unhandled.R' 'normalize.R' 'sgr.R'",
      "NeedsCompilation": "yes",
      "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c)",
      "Maintainer": "Brodie Gaslam <brodie.gaslam@yahoo.com>",
      "Repository": "CRAN"
    },
    "farver": {
      "Package": "farver",
      "Version": "2.1.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "High Performance Colour Space Manipulation",
      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Berendea\", \"Nicolae\", role = \"aut\", comment = \"Author of the ColorSpace C++ library\"), person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The encoding of colour can be handled in many different ways, using different colour spaces. As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.",
      "License": "MIT + file LICENSE",
      "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver",
      "BugReports": "https://github.com/thomasp85/farver/issues",
      "Suggests": [
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        "testthat (>= 3.0.0)"
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      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
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    "fastmap": {
      "Package": "fastmap",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Fast Data Structures",
      "Authors@R": "c( person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\") )",
      "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "Suggests": [
        "testthat (>= 2.1.1)"
      ],
      "URL": "https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap",
      "BugReports": "https://github.com/r-lib/fastmap/issues",
      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd], Tessil [cph] (hopscotch_map library)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
    },
    "fastmatch": {
      "Package": "fastmatch",
      "Version": "1.1-6",
      "Source": "Repository",
      "Title": "Fast 'match()' Function",
      "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, <https://orcid.org/0000-0003-2297-1732>)",
      "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\"))",
      "Maintainer": "Simon Urbanek <simon.urbanek@r-project.org>",
      "Description": "Package providing a fast match() replacement for cases that require repeated look-ups. It is slightly faster that R's built-in match() function on first match against a table, but extremely fast on any subsequent lookup as it keeps the hash table in memory.",
      "License": "GPL-2",
      "Depends": [
        "R (>= 2.3.0)"
      ],
      "URL": "http://www.rforge.net/fastmatch",
      "NeedsCompilation": "yes",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "fgsea": {
      "Package": "fgsea",
      "Version": "1.28.0",
      "Source": "Bioconductor",
      "Title": "Fast Gene Set Enrichment Analysis",
      "Authors@R": "c(person(\"Gennady\", \"Korotkevich\", role = \"aut\"), person(\"Vladimir\", \"Sukhov\", role = \"aut\"), person(\"Nikolay\", \"Budin\", role = \"ctb\"), person(\"Alexey\", \"Sergushichev\", email = \"alsergbox@gmail.com\", role = c(\"aut\", \"cre\")))",
      "Description": "The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.",
      "biocViews": "GeneExpression, DifferentialExpression, GeneSetEnrichment, Pathways",
      "SystemRequirements": "C++11",
      "Depends": [
        "R (>= 4.1)"
      ],
      "Imports": [
        "Rcpp",
        "data.table",
        "BiocParallel",
        "stats",
        "ggplot2 (>= 2.2.0)",
        "cowplot",
        "grid",
        "fastmatch",
        "Matrix",
        "scales",
        "utils"
      ],
      "Suggests": [
        "testthat",
        "knitr",
        "rmarkdown",
        "reactome.db",
        "AnnotationDbi",
        "parallel",
        "org.Mm.eg.db",
        "limma",
        "GEOquery",
        "msigdbr",
        "aggregation",
        "Seurat"
      ],
      "License": "MIT + file LICENCE",
      "LazyData": "true",
      "LinkingTo": [
        "Rcpp",
        "BH"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "VignetteBuilder": "knitr",
      "URL": "https://github.com/ctlab/fgsea/",
      "BugReports": "https://github.com/ctlab/fgsea/issues",
      "git_url": "https://git.bioconductor.org/packages/fgsea",
      "git_branch": "RELEASE_3_18",
      "git_last_commit": "6c19b1e",
      "git_last_commit_date": "2023-10-24",
      "NeedsCompilation": "yes",
      "Author": "Gennady Korotkevich [aut], Vladimir Sukhov [aut], Nikolay Budin [ctb], Alexey Sergushichev [aut, cre]",
      "Maintainer": "Alexey Sergushichev <alsergbox@gmail.com>"
    },
    "fontawesome": {
      "Package": "fontawesome",
      "Version": "0.5.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Easily Work with 'Font Awesome' Icons",
      "Description": "Easily and flexibly insert 'Font Awesome' icons into 'R Markdown' documents and 'Shiny' apps. These icons can be inserted into HTML content through inline 'SVG' tags or 'i' tags. There is also a utility function for exporting 'Font Awesome' icons as 'PNG' images for those situations where raster graphics are needed.",
      "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"ctb\"), person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"), comment = \"Font-Awesome font\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/rstudio/fontawesome, https://rstudio.github.io/fontawesome/",
      "BugReports": "https://github.com/rstudio/fontawesome/issues",
      "Encoding": "UTF-8",
      "ByteCompile": "true",
      "RoxygenNote": "7.3.2",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "rlang (>= 1.0.6)",
        "htmltools (>= 0.5.1.1)"
      ],
      "Suggests": [
        "covr",
        "dplyr (>= 1.0.8)",
        "gt (>= 0.9.0)",
        "knitr (>= 1.31)",
        "testthat (>= 3.0.0)",
        "rsvg"
      ],
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Winston Chang [ctb], Dave Gandy [ctb, cph] (Font-Awesome font), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Richard Iannone <rich@posit.co>",
      "Repository": "RSPM"
    },
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      "Package": "forcats",
      "Version": "1.0.0",
      "Source": "Repository",
      "Title": "Tools for Working with Categorical Variables (Factors)",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').",
      "License": "MIT + file LICENSE",
      "URL": "https://forcats.tidyverse.org/, https://github.com/tidyverse/forcats",
      "BugReports": "https://github.com/tidyverse/forcats/issues",
      "Depends": [
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      "Imports": [
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        "rlang (>= 1.0.0)",
        "tibble"
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        "dplyr",
        "ggplot2",
        "knitr",
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
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      "Encoding": "UTF-8",
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      "RoxygenNote": "7.2.3",
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      "Author": "Hadley Wickham [aut, cre], RStudio [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
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      "Package": "formatR",
      "Version": "1.14",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Format R Code Automatically",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Ed\", \"Lee\", role = \"ctb\"), person(\"Eugene\", \"Ha\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person() )",
      "Description": "Provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).",
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        "R (>= 3.2.3)"
      ],
      "Suggests": [
        "rstudioapi",
        "shiny",
        "testit",
        "rmarkdown",
        "knitr"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/formatR",
      "BugReports": "https://github.com/yihui/formatR/issues",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Ed Lee [ctb], Eugene Ha [ctb], Kohske Takahashi [ctb], Pavel Krivitsky [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
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      "Version": "1.6.5",
      "Source": "Repository",
      "Title": "Cross-Platform File System Operations Based on 'libuv'",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.",
      "License": "MIT + file LICENSE",
      "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs",
      "BugReports": "https://github.com/r-lib/fs/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "methods"
      ],
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        "crayon",
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        "rmarkdown",
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        "tibble (>= 1.1.0)",
        "vctrs (>= 0.3.0)",
        "withr"
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      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (<https://orcid.org/0000-0002-5147-4711>), Kohske Takahashi [aut], Claus Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Kara Woo [aut] (<https://orcid.org/0000-0002-5125-4188>), Hiroaki Yutani [aut] (<https://orcid.org/0000-0002-3385-7233>), Dewey Dunnington [aut] (<https://orcid.org/0000-0002-9415-4582>), Teun van den Brand [aut] (<https://orcid.org/0000-0002-9335-7468>), Posit, PBC [cph, fnd]",
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        "yulab.utils"
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      "Title": "'ggplot2' Based Publication Ready Plots",
      "Date": "2023-02-05",
      "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"))",
      "Description": "The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.",
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        "dplyr (>= 0.7.1)",
        "cowplot (>= 1.1.1)",
        "ggsignif",
        "scales",
        "gridExtra",
        "glue",
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        "rlang (>= 0.4.6)",
        "rstatix (>= 0.7.2)",
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        "RColorBrewer",
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      "RoxygenNote": "7.2.3",
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      "NeedsCompilation": "no",
      "Author": "Alboukadel Kassambara [aut, cre]",
      "Maintainer": "Alboukadel Kassambara <alboukadel.kassambara@gmail.com>",
      "Repository": "CRAN"
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      "Version": "2.2.1",
      "Source": "Repository",
      "Type": "Package",
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      "Authors@R": "c(person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\")), person(given = \"RStudio\", role = \"cph\"))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "The grammar of graphics as implemented in ggplot2 is a poor fit for graph and network visualizations due to its reliance on tabular data input. ggraph is an extension of the ggplot2 API tailored to graph visualizations and provides the same flexible approach to building up plots layer by layer.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "LazyData": "TRUE",
      "Imports": [
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        "ggforce (>= 0.3.1)",
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        "igraph (>= 1.0.0)",
        "scales",
        "MASS",
        "ggrepel",
        "utils",
        "stats",
        "viridis",
        "rlang",
        "tidygraph",
        "graphlayouts (>= 1.1.0)",
        "withr",
        "cli",
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        "lifecycle",
        "memoise"
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        "knitr",
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        "sfnetworks"
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      "Depends": [
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        "ggplot2 (>= 3.5.0)"
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      "URL": "https://ggraph.data-imaginist.com, https://github.com/thomasp85/ggraph",
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      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), RStudio [cph]",
      "Repository": "CRAN"
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      "Package": "ggrepel",
      "Version": "0.9.6",
      "Source": "Repository",
      "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )",
      "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'",
      "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.",
      "Depends": [
        "R (>= 3.0.0)",
        "ggplot2 (>= 2.2.0)"
      ],
      "Imports": [
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        "Rcpp",
        "rlang (>= 0.3.0)",
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        "withr (>= 2.5.0)"
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      "Suggests": [
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        "rmarkdown",
        "testthat",
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        "vdiffr",
        "gridExtra",
        "ggpp",
        "patchwork",
        "devtools",
        "prettydoc",
        "ggbeeswarm",
        "dplyr",
        "magrittr",
        "readr",
        "stringr"
      ],
      "VignetteBuilder": "knitr",
      "License": "GPL-3 | file LICENSE",
      "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel",
      "BugReports": "https://github.com/slowkow/ggrepel/issues",
      "RoxygenNote": "7.3.1",
      "LinkingTo": [
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      ],
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Kamil Slowikowski [aut, cre] (<https://orcid.org/0000-0002-2843-6370>), Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>), Sean Hughes [ctb] (<https://orcid.org/0000-0002-9409-9405>), Trung Kien Dang [ctb] (<https://orcid.org/0000-0001-7562-6495>), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (<https://orcid.org/0000-0003-4920-3880>), Zhian N Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Thompson Ryan [ctb] (<https://orcid.org/0000-0002-0450-8181>), Dervieux Christophe [ctb] (<https://orcid.org/0000-0003-4474-2498>), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>), Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>), Michał Krassowski [ctb] (<https://orcid.org/0000-0002-9638-7785>), Michael Chirico [ctb] (<https://orcid.org/0000-0003-0787-087X>), Pedro Aphalo [ctb] (<https://orcid.org/0000-0003-3385-972X>), Francis Barton [ctb]",
      "Maintainer": "Kamil Slowikowski <kslowikowski@gmail.com>",
      "Repository": "CRAN"
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      "Package": "ggsci",
      "Version": "3.2.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'",
      "Authors@R": "c( person(\"Nan\", \"Xiao\", email = \"me@nanx.me\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0250-5673\")), person(\"Joshua\", \"Cook\", email = \"joshuacook0023@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Jégousse\", email = \"cat3@hi.is\", role = \"ctb\"), person(\"Hui\", \"Chen\", email = \"huichen@zju.edu.cn\", role = \"ctb\"), person(\"Miaozhu\", \"Li\", email = \"miaozhu.li@duke.edu\", role = \"ctb\") )",
      "Maintainer": "Nan Xiao <me@nanx.me>",
      "Description": "A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.",
      "License": "GPL (>= 3)",
      "URL": "https://nanx.me/ggsci/, https://github.com/nanxstats/ggsci",
      "BugReports": "https://github.com/nanxstats/ggsci/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "ggplot2 (>= 2.0.0)",
        "grDevices",
        "scales"
      ],
      "Suggests": [
        "gridExtra",
        "knitr",
        "ragg",
        "rmarkdown"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>), Joshua Cook [ctb], Clara Jégousse [ctb], Hui Chen [ctb], Miaozhu Li [ctb]",
      "Repository": "CRAN"
    },
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      "Package": "ggsignif",
      "Version": "0.6.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Significance Brackets for 'ggplot2'",
      "Authors@R": "c( person(given = \"Constantin\", family = \"Ahlmann-Eltze\", role = c(\"aut\", \"cre\", \"ctb\"), email = \"artjom31415@googlemail.com\", comment = c(ORCID = \"0000-0002-3762-068X\", Twitter = \"@const_ae\")), person(given = \"Indrajeet\", family = \"Patil\", role = c(\"aut\", \"ctb\"), email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\", Twitter = \"@patilindrajeets\")) )",
      "Description": "Enrich your 'ggplots' with group-wise comparisons. This package provides an easy way to indicate if two groups are significantly different. Commonly this is shown by a bracket on top connecting the groups of interest which itself is annotated with the level of significance (NS, *, **, ***).  The package provides a single layer (geom_signif()) that takes the groups for comparison and the test (t.test(), wilcox.text() etc.) as arguments and adds the annotation to the plot.",
      "License": "GPL-3 | file LICENSE",
      "URL": "https://const-ae.github.io/ggsignif/, https://github.com/const-ae/ggsignif",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "Imports": [
        "ggplot2 (>= 3.3.5)"
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        "rmarkdown",
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      ],
      "RoxygenNote": "7.2.1",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "NeedsCompilation": "no",
      "Author": "Constantin Ahlmann-Eltze [aut, cre, ctb] (<https://orcid.org/0000-0002-3762-068X>, @const_ae), Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)",
      "Maintainer": "Constantin Ahlmann-Eltze <artjom31415@googlemail.com>",
      "Repository": "CRAN"
    },
    "ggtree": {
      "Package": "ggtree",
      "Version": "3.10.1",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "an R package for visualization of tree and annotation data",
      "Authors@R": "c( person(\"Guangchuang\", \"Yu\",     email = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),  comment = c(ORCID = \"0000-0002-6485-8781\")), person(\"Tommy Tsan-Yuk\", \"Lam\", email = \"tylam.tommy@gmail.com\",   role = c(\"aut\", \"ths\")), person(\"Shuangbin\", \"Xu\",       email = \"xshuangbin@163.com\",      role = \"aut\",  comment = c(ORCID=\"0000-0003-3513-5362\")), person(\"Lin\", \" Li\",            email = \"williamlee2220@qq.com\",   role = \"ctb\"), person(\"Bradley\", \"Jones\",      email = \"bjones@cfenet.ubc.ca\",    role = \"ctb\"), person(\"Justin\", \"Silverman\",   email = \"jsilve24@gmail.com\",      role = \"ctb\"), person(\"Watal M.\", \"Iwasaki\",   email = \"heavy.watal@gmail.com\",   role = \"ctb\"), person(\"Yonghe\", \"Xia\",         email = \"xiayh17@gmail.com\",       role = \"ctb\"), person(\"Ruizhu\", \"Huang\",       email = \"ruizhuRH@gmail.com\",      role = \"ctb\") )",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Description": "'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "ape",
        "aplot",
        "dplyr",
        "ggplot2 (> 3.3.6)",
        "grid",
        "magrittr",
        "methods",
        "purrr",
        "rlang",
        "ggfun (>= 0.0.9)",
        "yulab.utils",
        "tidyr",
        "tidytree (>= 0.4.5)",
        "treeio (>= 1.8.0)",
        "utils",
        "scales",
        "stats",
        "cli"
      ],
      "Suggests": [
        "emojifont",
        "ggimage",
        "ggplotify",
        "shadowtext",
        "grDevices",
        "knitr",
        "prettydoc",
        "rmarkdown",
        "testthat",
        "tibble",
        "glue"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "Encoding": "UTF-8",
      "License": "Artistic-2.0",
      "URL": "https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/ (book), http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628 (paper)",
      "BugReports": "https://github.com/YuLab-SMU/ggtree/issues",
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      "git_last_commit_date": "2024-02-25",
      "Repository": "Bioconductor 3.18",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>), Lin Li [ctb], Bradley Jones [ctb], Justin Silverman [ctb], Watal M. Iwasaki [ctb], Yonghe Xia [ctb], Ruizhu Huang [ctb]"
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    "gh": {
      "Package": "gh",
      "Version": "1.4.1",
      "Source": "Repository",
      "Title": "'GitHub' 'API'",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Minimal client to access the 'GitHub' 'API'.",
      "License": "MIT + file LICENSE",
      "URL": "https://gh.r-lib.org/, https://github.com/r-lib/gh#readme",
      "BugReports": "https://github.com/r-lib/gh/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
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        "gitcreds",
        "glue",
        "httr2",
        "ini",
        "jsonlite",
        "lifecycle",
        "rlang (>= 1.0.0)"
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      "Suggests": [
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        "knitr",
        "mockery",
        "rmarkdown",
        "rprojroot",
        "spelling",
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
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      "RoxygenNote": "7.3.1.9000",
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      "Author": "Gábor Csárdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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    "gitcreds": {
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      "Version": "0.1.2",
      "Source": "Repository",
      "Title": "Query 'git' Credentials from 'R'",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Query, set, delete credentials from the 'git' credential store. Manage 'GitHub' tokens and other 'git' credentials. This package is to be used by other packages that need to authenticate to 'GitHub' and/or other 'git' repositories.",
      "License": "MIT + file LICENSE",
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      "BugReports": "https://github.com/r-lib/gitcreds/issues",
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      "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation <https://www.python.org/dev/peps/pep-0498/> and Docstrings <https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted String Literals <https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.",
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      "BugReports": "https://github.com/tidyverse/glue/issues",
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        "RSQLite",
        "testthat (>= 3.2.0)",
        "vctrs (>= 0.3.0)",
        "waldo (>= 0.5.3)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "googledrive": {
      "Package": "googledrive",
      "Version": "2.1.1",
      "Source": "Repository",
      "Title": "An Interface to Google Drive",
      "Authors@R": "c( person(\"Lucy\", \"D'Agostino McGowan\", , role = \"aut\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Manage Google Drive files from R.",
      "License": "MIT + file LICENSE",
      "URL": "https://googledrive.tidyverse.org, https://github.com/tidyverse/googledrive",
      "BugReports": "https://github.com/tidyverse/googledrive/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli (>= 3.0.0)",
        "gargle (>= 1.5.0)",
        "glue (>= 1.4.2)",
        "httr",
        "jsonlite",
        "lifecycle",
        "magrittr",
        "pillar (>= 1.9.0)",
        "purrr (>= 1.0.1)",
        "rlang (>= 1.0.2)",
        "tibble (>= 2.0.0)",
        "utils",
        "uuid",
        "vctrs (>= 0.3.0)",
        "withr"
      ],
      "Suggests": [
        "curl",
        "dplyr (>= 1.0.0)",
        "knitr",
        "mockr",
        "rmarkdown",
        "spelling",
        "testthat (>= 3.1.3)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Lucy D'Agostino McGowan [aut], Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "googlesheets4": {
      "Package": "googlesheets4",
      "Version": "1.1.1",
      "Source": "Repository",
      "Title": "Access Google Sheets using the Sheets API V4",
      "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Interact with Google Sheets through the Sheets API v4 <https://developers.google.com/sheets/api>. \"API\" is an acronym for \"application programming interface\"; the Sheets API allows users to interact with Google Sheets programmatically, instead of via a web browser. The \"v4\" refers to the fact that the Sheets API is currently at version 4. This package can read and write both the metadata and the cell data in a Sheet.",
      "License": "MIT + file LICENSE",
      "URL": "https://googlesheets4.tidyverse.org, https://github.com/tidyverse/googlesheets4",
      "BugReports": "https://github.com/tidyverse/googlesheets4/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cellranger",
        "cli (>= 3.0.0)",
        "curl",
        "gargle (>= 1.5.0)",
        "glue (>= 1.3.0)",
        "googledrive (>= 2.1.0)",
        "httr",
        "ids",
        "lifecycle",
        "magrittr",
        "methods",
        "purrr",
        "rematch2",
        "rlang (>= 1.0.2)",
        "tibble (>= 2.1.1)",
        "utils",
        "vctrs (>= 0.2.3)",
        "withr"
      ],
      "Suggests": [
        "readr",
        "rmarkdown",
        "spelling",
        "testthat (>= 3.1.7)"
      ],
      "ByteCompile": "true",
      "Config/Needs/website": "tidyverse, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Jennifer Bryan [cre, aut] (<https://orcid.org/0000-0002-6983-2759>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "graphlayouts": {
      "Package": "graphlayouts",
      "Version": "1.2.2",
      "Source": "Repository",
      "Title": "Additional Layout Algorithms for Network Visualizations",
      "Authors@R": "person(\"David\", \"Schoch\", email = \"david@schochastics.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2952-4812\"))",
      "Description": "Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.  Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.  Some more specific algorithms allow the user to emphasize hidden group structures in networks or focus on specific nodes.",
      "URL": "https://github.com/schochastics/graphlayouts, https://schochastics.github.io/graphlayouts/",
      "BugReports": "https://github.com/schochastics/graphlayouts/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "Imports": [
        "igraph (>= 2.0.0)",
        "Rcpp"
      ],
      "Suggests": [
        "testthat",
        "ggplot2",
        "uwot",
        "oaqc"
      ],
      "LinkingTo": [
        "Rcpp",
        "RcppArmadillo"
      ],
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "David Schoch [aut, cre] (<https://orcid.org/0000-0003-2952-4812>)",
      "Maintainer": "David Schoch <david@schochastics.net>",
      "Repository": "CRAN"
    },
    "gridExtra": {
      "Package": "gridExtra",
      "Version": "2.3",
      "Source": "Repository",
      "Authors@R": "c(person(\"Baptiste\", \"Auguie\", email = \"baptiste.auguie@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Anton\", \"Antonov\", email = \"tonytonov@gmail.com\", role = c(\"ctb\")))",
      "License": "GPL (>= 2)",
      "Title": "Miscellaneous Functions for \"Grid\" Graphics",
      "Type": "Package",
      "Description": "Provides a number of user-level functions to work with \"grid\" graphics, notably to arrange multiple grid-based plots on a page, and draw tables.",
      "VignetteBuilder": "knitr",
      "Imports": [
        "gtable",
        "grid",
        "grDevices",
        "graphics",
        "utils"
      ],
      "Suggests": [
        "ggplot2",
        "egg",
        "lattice",
        "knitr",
        "testthat"
      ],
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "no",
      "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]",
      "Maintainer": "Baptiste Auguie <baptiste.auguie@gmail.com>",
      "Repository": "CRAN"
    },
    "gridGraphics": {
      "Package": "gridGraphics",
      "Version": "0.5-1",
      "Source": "Repository",
      "Title": "Redraw Base Graphics Using 'grid' Graphics",
      "Authors@R": "c(person(\"Paul\", \"Murrell\", role = c(\"cre\", \"aut\"), email = \"paul@stat.auckland.ac.nz\"), person(\"Zhijian\", \"Wen\", role = \"aut\", email = \"jwen246@aucklanduni.ac.nz\"))",
      "Description": "Functions to convert a page of plots drawn with the  'graphics' package into identical output drawn with the 'grid' package. The result looks like the original 'graphics'-based plot, but consists of 'grid' grobs and viewports that can then be manipulated with  'grid' functions (e.g., edit grobs and revisit viewports).",
      "Depends": [
        "grid",
        "graphics"
      ],
      "Imports": [
        "grDevices"
      ],
      "Suggests": [
        "magick (>= 1.3)",
        "pdftools (>= 1.6)"
      ],
      "License": "GPL (>= 2)",
      "URL": "https://github.com/pmur002/gridgraphics",
      "NeedsCompilation": "no",
      "Author": "Paul Murrell [cre, aut], Zhijian Wen [aut]",
      "Maintainer": "Paul Murrell <paul@stat.auckland.ac.nz>",
      "Repository": "CRAN"
    },
    "gson": {
      "Package": "gson",
      "Version": "0.1.0",
      "Source": "Repository",
      "Title": "Base Class and Methods for 'gson' Format",
      "Authors@R": "c( person(\"Guangchuang\", \"Yu\",     email = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-6485-8781\")) )",
      "Description": "Proposes a new file format ('gson') for storing gene set and related information, and provides read, write and other utilities to process this file format.",
      "Imports": [
        "jsonlite",
        "methods",
        "rlang",
        "stats",
        "tidyr",
        "utils"
      ],
      "ByteCompile": "true",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>)",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Repository": "CRAN"
    },
    "gtable": {
      "Package": "gtable",
      "Version": "0.3.6",
      "Source": "Repository",
      "Title": "Arrange 'Grobs' in Tables",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.",
      "License": "MIT + file LICENSE",
      "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable",
      "BugReports": "https://github.com/r-lib/gtable/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Imports": [
        "cli",
        "glue",
        "grid",
        "lifecycle",
        "rlang (>= 1.1.0)",
        "stats"
      ],
      "Suggests": [
        "covr",
        "ggplot2",
        "knitr",
        "profvis",
        "rmarkdown",
        "testthat (>= 3.0.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/usethis/last-upkeep": "2024-10-25",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "RSPM"
    },
    "haven": {
      "Package": "haven",
      "Version": "2.5.4",
      "Source": "Repository",
      "Title": "Import and Export 'SPSS', 'Stata' and 'SAS' Files",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Evan\", \"Miller\", role = c(\"aut\", \"cph\"), comment = \"Author of included ReadStat code\"), person(\"Danny\", \"Smith\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Import foreign statistical formats into R via the embedded 'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.",
      "License": "MIT + file LICENSE",
      "URL": "https://haven.tidyverse.org, https://github.com/tidyverse/haven, https://github.com/WizardMac/ReadStat",
      "BugReports": "https://github.com/tidyverse/haven/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli (>= 3.0.0)",
        "forcats (>= 0.2.0)",
        "hms",
        "lifecycle",
        "methods",
        "readr (>= 0.1.0)",
        "rlang (>= 0.4.0)",
        "tibble",
        "tidyselect",
        "vctrs (>= 0.3.0)"
      ],
      "Suggests": [
        "covr",
        "crayon",
        "fs",
        "knitr",
        "pillar (>= 1.4.0)",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "utf8"
      ],
      "LinkingTo": [
        "cpp11"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "GNU make, zlib: zlib1g-dev (deb), zlib-devel (rpm)",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre], Evan Miller [aut, cph] (Author of included ReadStat code), Danny Smith [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "here": {
      "Package": "here",
      "Version": "1.0.1",
      "Source": "Repository",
      "Title": "A Simpler Way to Find Your Files",
      "Date": "2020-12-13",
      "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"krlmlr+r@mailbox.org\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\", comment = c(ORCID = \"0000-0002-6983-2759\")))",
      "Description": "Constructs paths to your project's files. Declare the relative path of a file within your project with 'i_am()'. Use the 'here()' function as a drop-in replacement for 'file.path()', it will always locate the files relative to your project root.",
      "License": "MIT + file LICENSE",
      "URL": "https://here.r-lib.org/, https://github.com/r-lib/here",
      "BugReports": "https://github.com/r-lib/here/issues",
      "Imports": [
        "rprojroot (>= 2.0.2)"
      ],
      "Suggests": [
        "conflicted",
        "covr",
        "fs",
        "knitr",
        "palmerpenguins",
        "plyr",
        "readr",
        "rlang",
        "rmarkdown",
        "testthat",
        "uuid",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.1.1.9000",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)",
      "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
      "Repository": "CRAN"
    },
    "highr": {
      "Package": "highr",
      "Version": "0.11",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Syntax Highlighting for R Source Code",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )",
      "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package (<https://gitlab.com/saalen/highlight>).",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "xfun (>= 0.18)"
      ],
      "Suggests": [
        "knitr",
        "markdown",
        "testit"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/highr",
      "BugReports": "https://github.com/yihui/highr/issues",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "hms": {
      "Package": "hms",
      "Version": "1.1.3",
      "Source": "Repository",
      "Title": "Pretty Time of Day",
      "Date": "2023-03-21",
      "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )",
      "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.",
      "Imports": [
        "lifecycle",
        "methods",
        "pkgconfig",
        "rlang (>= 1.0.2)",
        "vctrs (>= 0.3.8)"
      ],
      "Suggests": [
        "crayon",
        "lubridate",
        "pillar (>= 1.1.0)",
        "testthat (>= 3.0.0)"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms",
      "BugReports": "https://github.com/tidyverse/hms/issues",
      "RoxygenNote": "7.2.3",
      "Config/testthat/edition": "3",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "false",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd], RStudio [fnd]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "htmltools": {
      "Package": "htmltools",
      "Version": "0.5.8.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Tools for HTML",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools for HTML generation and output.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/rstudio/htmltools, https://rstudio.github.io/htmltools/",
      "BugReports": "https://github.com/rstudio/htmltools/issues",
      "Depends": [
        "R (>= 2.14.1)"
      ],
      "Imports": [
        "base64enc",
        "digest",
        "fastmap (>= 1.1.0)",
        "grDevices",
        "rlang (>= 1.0.0)",
        "utils"
      ],
      "Suggests": [
        "Cairo",
        "markdown",
        "ragg",
        "shiny",
        "testthat",
        "withr"
      ],
      "Enhances": [
        "knitr"
      ],
      "Config/Needs/check": "knitr",
      "Config/Needs/website": "rstudio/quillt, bench",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Carson Sievert <carson@posit.co>",
      "Repository": "CRAN"
    },
    "htmlwidgets": {
      "Package": "htmlwidgets",
      "Version": "1.6.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "HTML Widgets for R",
      "Authors@R": "c( person(\"Ramnath\", \"Vaidyanathan\", role = c(\"aut\", \"cph\")), person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Kenton\", \"Russell\", role = c(\"aut\", \"cph\")), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/ramnathv/htmlwidgets",
      "BugReports": "https://github.com/ramnathv/htmlwidgets/issues",
      "Imports": [
        "grDevices",
        "htmltools (>= 0.5.7)",
        "jsonlite (>= 0.9.16)",
        "knitr (>= 1.8)",
        "rmarkdown",
        "yaml"
      ],
      "Suggests": [
        "testthat"
      ],
      "Enhances": [
        "shiny (>= 1.1)"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Ramnath Vaidyanathan [aut, cph], Yihui Xie [aut], JJ Allaire [aut], Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Kenton Russell [aut, cph], Ellis Hughes [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Carson Sievert <carson@posit.co>",
      "Repository": "CRAN"
    },
    "httpuv": {
      "Package": "httpuv",
      "Version": "1.6.15",
      "Source": "Repository",
      "Type": "Package",
      "Title": "HTTP and WebSocket Server Library",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", \"fnd\", role = \"cph\"), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )",
      "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone.  httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)",
      "License": "GPL (>= 2) | file LICENSE",
      "URL": "https://github.com/rstudio/httpuv",
      "BugReports": "https://github.com/rstudio/httpuv/issues",
      "Depends": [
        "R (>= 2.15.1)"
      ],
      "Imports": [
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        "promises",
        "R6",
        "Rcpp (>= 1.0.7)",
        "utils"
      ],
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        "callr",
        "curl",
        "testthat",
        "websocket"
      ],
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        "Rcpp"
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      "RoxygenNote": "7.3.1",
      "SystemRequirements": "GNU make, zlib",
      "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
    },
    "httr": {
      "Package": "httr",
      "Version": "1.4.7",
      "Source": "Repository",
      "Title": "Tools for Working with URLs and HTTP",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).",
      "License": "MIT + file LICENSE",
      "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr",
      "BugReports": "https://github.com/r-lib/httr/issues",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "curl (>= 5.0.2)",
        "jsonlite",
        "mime",
        "openssl (>= 0.8)",
        "R6"
      ],
      "Suggests": [
        "covr",
        "httpuv",
        "jpeg",
        "knitr",
        "png",
        "readr",
        "rmarkdown",
        "testthat (>= 0.8.0)",
        "xml2"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "httr2": {
      "Package": "httr2",
      "Version": "1.1.2",
      "Source": "Repository",
      "Title": "Perform HTTP Requests and Process the Responses",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )",
      "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.",
      "License": "MIT + file LICENSE",
      "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2",
      "BugReports": "https://github.com/r-lib/httr2/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Imports": [
        "cli (>= 3.0.0)",
        "curl (>= 6.2.1)",
        "glue",
        "lifecycle",
        "magrittr",
        "openssl",
        "R6",
        "rappdirs",
        "rlang (>= 1.1.0)",
        "vctrs (>= 0.6.3)",
        "withr"
      ],
      "Suggests": [
        "askpass",
        "bench",
        "clipr",
        "covr",
        "docopt",
        "httpuv",
        "jose",
        "jsonlite",
        "knitr",
        "later (>= 1.4.0)",
        "nanonext",
        "paws.common",
        "promises",
        "rmarkdown",
        "testthat (>= 3.1.8)",
        "tibble",
        "webfakes",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "multi-req, resp-stream, req-perform",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "RSPM"
    },
    "ids": {
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      "Version": "1.0.1",
      "Source": "Repository",
      "Title": "Generate Random Identifiers",
      "Authors@R": "person(\"Rich\", \"FitzJohn\", role = c(\"aut\", \"cre\"), email = \"rich.fitzjohn@gmail.com\")",
      "Description": "Generate random or human readable and pronounceable identifiers.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/richfitz/ids",
      "BugReports": "https://github.com/richfitz/ids/issues",
      "Imports": [
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      "Author": "Rich FitzJohn [aut, cre]",
      "Maintainer": "Rich FitzJohn <rich.fitzjohn@gmail.com>",
      "Repository": "CRAN"
    },
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      "Version": "2.1.4",
      "Source": "Repository",
      "Title": "Network Analysis and Visualization",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Maëlle\", \"Salmon\", role = \"ctb\"), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\") )",
      "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.",
      "License": "GPL (>= 2)",
      "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/",
      "BugReports": "https://github.com/igraph/rigraph/issues",
      "Depends": [
        "methods",
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "cli",
        "graphics",
        "grDevices",
        "lifecycle",
        "magrittr",
        "Matrix",
        "pkgconfig (>= 2.0.0)",
        "rlang",
        "stats",
        "utils",
        "vctrs"
      ],
      "Suggests": [
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        "callr",
        "decor",
        "digest",
        "igraphdata",
        "knitr",
        "rgl (>= 1.3.14)",
        "rmarkdown",
        "scales",
        "stats4",
        "tcltk",
        "testthat",
        "vdiffr",
        "withr"
      ],
      "Enhances": [
        "graph"
      ],
      "LinkingTo": [
        "cpp11 (>= 0.5.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/build": "roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag",
      "Config/Needs/coverage": "covr",
      "Config/Needs/website": "readr",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "vs-es, scan, vs-operators, weakref, watts.strogatz.game",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2.9000",
      "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut] (<https://orcid.org/0000-0001-7098-9676>), Tamás Nepusz [aut] (<https://orcid.org/0000-0002-1451-338X>), Vincent Traag [aut] (<https://orcid.org/0000-0003-3170-3879>), Szabolcs Horvát [aut] (<https://orcid.org/0000-0002-3100-523X>), Fabio Zanini [aut] (<https://orcid.org/0000-0001-7097-8539>), Daniel Noom [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Maëlle Salmon [ctb], Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "ini": {
      "Package": "ini",
      "Version": "0.3.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Read and Write '.ini' Files",
      "Date": "2018-05-19",
      "Author": "David Valentim Dias",
      "Maintainer": "David Valentim Dias <dvdscripter@gmail.com>",
      "Description": "Parse simple '.ini' configuration files to an structured list. Users can manipulate this resulting list with lapply() functions. This same structured list can be used to write back to file after modifications.",
      "License": "GPL-3",
      "URL": "https://github.com/dvdscripter/ini",
      "BugReports": "https://github.com/dvdscripter/ini/issues",
      "LazyData": "FALSE",
      "RoxygenNote": "6.0.1",
      "Suggests": [
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      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "isoband": {
      "Package": "isoband",
      "Version": "0.2.7",
      "Source": "Repository",
      "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-5147-4711\")) )",
      "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.",
      "License": "MIT + file LICENSE",
      "URL": "https://isoband.r-lib.org",
      "BugReports": "https://github.com/r-lib/isoband/issues",
      "Imports": [
        "grid",
        "utils"
      ],
      "Suggests": [
        "covr",
        "ggplot2",
        "knitr",
        "magick",
        "microbenchmark",
        "rmarkdown",
        "sf",
        "testthat",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "C++11",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Claus O. Wilke [aut] (Original author, <https://orcid.org/0000-0002-7470-9261>), Thomas Lin Pedersen [aut] (<https://orcid.org/0000-0002-5147-4711>)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "jquerylib": {
      "Package": "jquerylib",
      "Version": "0.1.4",
      "Source": "Repository",
      "Title": "Obtain 'jQuery' as an HTML Dependency Object",
      "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )",
      "Description": "Obtain any major version of 'jQuery' (<https://code.jquery.com/>) and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Config/testthat/edition": "3",
      "RoxygenNote": "7.0.2",
      "Imports": [
        "htmltools"
      ],
      "Suggests": [
        "testthat"
      ],
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)",
      "Maintainer": "Carson Sievert <carson@rstudio.com>",
      "Repository": "CRAN"
    },
    "jsonlite": {
      "Package": "jsonlite",
      "Version": "1.9.1",
      "Source": "Repository",
      "Title": "A Simple and Robust JSON Parser and Generator for R",
      "License": "MIT + file LICENSE",
      "Depends": [
        "methods"
      ],
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))",
      "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805",
      "BugReports": "https://github.com/jeroen/jsonlite/issues",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "VignetteBuilder": "knitr, R.rsp",
      "Description": "A reasonably fast JSON parser and generator, optimized for statistical  data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API.  The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains  functions to stream, validate, and prettify JSON data. The unit tests included  with the package verify that all edge cases are encoded and decoded consistently  for use with dynamic data in systems and applications.",
      "Suggests": [
        "httr",
        "vctrs",
        "testthat",
        "knitr",
        "rmarkdown",
        "R.rsp",
        "sf"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)",
      "Repository": "RSPM"
    },
    "knitr": {
      "Package": "knitr",
      "Version": "1.50",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A General-Purpose Package for Dynamic Report Generation in R",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), 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      "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.",
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        "R (>= 3.6.0)"
      ],
      "Imports": [
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        "htmlwidgets (>= 0.7)",
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        "png",
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        "tikzDevice (>= 0.10)",
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      "License": "GPL",
      "URL": "https://yihui.org/knitr/",
      "BugReports": "https://github.com/yihui/knitr/issues",
      "Encoding": "UTF-8",
      "VignetteBuilder": "litedown, knitr",
      "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).",
      "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'",
      "RoxygenNote": "7.3.2",
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      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (<https://orcid.org/0000-0003-1413-3974>), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "RSPM"
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    "labeling": {
      "Package": "labeling",
      "Version": "0.4.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Axis Labeling",
      "Date": "2023-08-29",
      "Author": "Justin Talbot,",
      "Maintainer": "Nuno Sempere <nuno.semperelh@gmail.com>",
      "Description": "Functions which provide a range of axis labeling algorithms.",
      "License": "MIT + file LICENSE | Unlimited",
      "Collate": "'labeling.R'",
      "NeedsCompilation": "no",
      "Imports": [
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        "graphics"
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      "Repository": "CRAN"
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      "Type": "Package",
      "Title": "Modeling Data with Functional Programming",
      "Date": "2019-09-15",
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        "formatR"
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      "Author": "Brian Lee Yung Rowe",
      "Maintainer": "Brian Lee Yung Rowe <r@zatonovo.com>",
      "Description": "A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.",
      "License": "LGPL-3",
      "LazyLoad": "yes",
      "NeedsCompilation": "no",
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      "Encoding": "UTF-8"
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      "Type": "Package",
      "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops",
      "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(\"Charlie\", \"Gao\", role = c(\"aut\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )",
      "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.",
      "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later",
      "BugReports": "https://github.com/r-lib/later/issues",
      "License": "MIT + file LICENSE",
      "Imports": [
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Charlie Gao [aut] (<https://orcid.org/0000-0002-0750-061X>), Posit Software, PBC [cph], Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)",
      "Maintainer": "Winston Chang <winston@posit.co>",
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      "Date": "2024-03-20",
      "Priority": "recommended",
      "Title": "Trellis Graphics for R",
      "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )",
      "Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.",
      "Depends": [
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      ],
      "Suggests": [
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        "MASS",
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        "colorspace"
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      "Imports": [
        "grid",
        "grDevices",
        "graphics",
        "stats",
        "utils"
      ],
      "Enhances": [
        "chron",
        "zoo"
      ],
      "LazyLoad": "yes",
      "LazyData": "yes",
      "License": "GPL (>= 2)",
      "URL": "https://lattice.r-forge.r-project.org/",
      "BugReports": "https://github.com/deepayan/lattice/issues",
      "NeedsCompilation": "yes",
      "Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)",
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      "Repository": "CRAN"
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      "Source": "Repository",
      "Title": "Lazy (Non-Standard) Evaluation",
      "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )",
      "License": "GPL-3",
      "LazyData": "true",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Suggests": [
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      "VignetteBuilder": "knitr",
      "RoxygenNote": "6.1.1",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre], RStudio [cph]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
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      "Version": "1.0.4",
      "Source": "Repository",
      "Title": "Manage the Life Cycle of your Package Functions",
      "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.",
      "License": "MIT + file LICENSE",
      "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle",
      "BugReports": "https://github.com/r-lib/lifecycle/issues",
      "Depends": [
        "R (>= 3.6)"
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      "Imports": [
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        "glue",
        "rlang (>= 1.1.0)"
      ],
      "Suggests": [
        "covr",
        "crayon",
        "knitr",
        "lintr",
        "rmarkdown",
        "testthat (>= 3.0.1)",
        "tibble",
        "tidyverse",
        "tools",
        "vctrs",
        "withr"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate, usethis",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.1",
      "NeedsCompilation": "no",
      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
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      "Title": "Linear Mixed-Effects Models using 'Eigen' and S4",
      "Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")) )",
      "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods.  The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".",
      "Depends": [
        "R (>= 3.6.0)",
        "Matrix",
        "methods",
        "stats"
      ],
      "LinkingTo": [
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        "RcppEigen (>= 0.3.3.9.4)",
        "Matrix (>= 1.2-3)"
      ],
      "Imports": [
        "graphics",
        "grid",
        "splines",
        "utils",
        "parallel",
        "MASS",
        "lattice",
        "boot",
        "nlme (>= 3.1-123)",
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        "reformulas (>= 0.3.0)"
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        "testthat (>= 0.8.1)",
        "ggplot2",
        "mlmRev",
        "optimx (>= 2013.8.6)",
        "gamm4",
        "pbkrtest",
        "HSAUR3",
        "numDeriv",
        "car",
        "dfoptim",
        "mgcv",
        "statmod",
        "rr2",
        "semEff",
        "tibble",
        "merDeriv"
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      "VignetteBuilder": "knitr",
      "LazyData": "yes",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/lme4/lme4/",
      "BugReports": "https://github.com/lme4/lme4/issues",
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      "NeedsCompilation": "yes",
      "Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut] (<https://orcid.org/0000-0002-8685-9910>), Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>), Steven Walker [aut] (<https://orcid.org/0000-0002-4394-9078>), Rune Haubo Bojesen Christensen [ctb] (<https://orcid.org/0000-0002-4494-3399>), Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>), Bin Dai [ctb], Fabian Scheipl [ctb] (<https://orcid.org/0000-0001-8172-3603>), Gabor Grothendieck [ctb], Peter Green [ctb] (<https://orcid.org/0000-0002-0238-9852>), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (<https://orcid.org/0000-0002-9101-3362>, shared copyright on simulate.formula), Emi Tanaka [ctb] (<https://orcid.org/0000-0002-1455-259X>), Mikael Jagan [ctb] (<https://orcid.org/0000-0002-3542-2938>), Ross D. Boylan [ctb] (<https://orcid.org/0009-0003-4123-8090>)",
      "Maintainer": "Ben Bolker <bbolker+lme4@gmail.com>",
      "Repository": "RSPM"
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      "Source": "Repository",
      "Type": "Package",
      "Title": "Tests in Linear Mixed Effects Models",
      "Authors@R": "c(person(\"Alexandra\", \"Kuznetsova\", role = c(\"aut\")), person(\"Per\", \"Bruun Brockhoff\", role = c(\"aut\", \"ths\"), email = \"perbb@dtu.dk\"), person(\"Rune\", \"Haubo Bojesen Christensen\", role =  c(\"aut\", \"cre\"), email = \"Rune.Haubo@gmail.com\"), person(\"Sofie\", \"Pødenphant Jensen\", role=c(\"ctb\"), email=\"sofp@dtu.dk\"))",
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      "NeedsCompilation": "no",
      "Author": "Alexandra Kuznetsova [aut], Per Bruun Brockhoff [aut, ths], Rune Haubo Bojesen Christensen [aut, cre], Sofie Pødenphant Jensen [ctb]",
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      "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )",
      "Maintainer": "Vitalie Spinu <spinuvit@gmail.com>",
      "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.",
      "License": "GPL (>= 2)",
      "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate",
      "BugReports": "https://github.com/tidyverse/lubridate/issues",
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        "R (>= 3.2)"
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        "knitr",
        "rmarkdown",
        "testthat (>= 2.1.0)",
        "vctrs (>= 0.6.5)"
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        "chron",
        "data.table",
        "timeDate",
        "tis",
        "zoo"
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      "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.",
      "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'",
      "NeedsCompilation": "yes",
      "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]",
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      "Version": "2.0.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Forward-Pipe Operator for R",
      "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette.  To quote Rene Magritte, \"Ceci n'est pas un pipe.\"",
      "License": "MIT + file LICENSE",
      "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr",
      "BugReports": "https://github.com/tidyverse/magrittr/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rlang",
        "rmarkdown",
        "testthat"
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      "VignetteBuilder": "knitr",
      "ByteCompile": "Yes",
      "Config/Needs/website": "tidyverse/tidytemplate",
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      "NeedsCompilation": "yes",
      "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], RStudio [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@rstudio.com>",
      "Repository": "CRAN"
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      "Title": "'Memoisation' of Functions",
      "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))",
      "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.",
      "License": "MIT + file LICENSE",
      "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise",
      "BugReports": "https://github.com/r-lib/memoise/issues",
      "Imports": [
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        "cachem"
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      "Suggests": [
        "digest",
        "aws.s3",
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        "googleAuthR",
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        "httr",
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      "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill Müller [aut], Daniel Cook [aut], Mark Edmondson [ctb]",
      "Maintainer": "Winston Chang <winston@rstudio.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Author": "Simon Wood <simon.wood@r-project.org>",
      "Maintainer": "Simon Wood <simon.wood@r-project.org>",
      "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation",
      "Description": "Generalized additive (mixed) models, some of their extensions and  other generalized ridge regression with multiple smoothing  parameter estimation by (Restricted) Marginal Likelihood,  Generalized Cross Validation and similar, or using iterated  nested Laplace approximation for fully Bayesian inference. See  Wood (2017) <doi:10.1201/9781315370279> for an overview.  Includes a gam() function, a wide variety of smoothers, 'JAGS'  support and distributions beyond the exponential family.",
      "Priority": "recommended",
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        "nlme (>= 3.1-64)"
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      "Imports": [
        "methods",
        "stats",
        "graphics",
        "Matrix",
        "splines",
        "utils"
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      "Suggests": [
        "parallel",
        "survival",
        "MASS"
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      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Package": "microbenchmark",
      "Version": "1.5.0",
      "Source": "Repository",
      "Title": "Accurate Timing Functions",
      "Description": "Provides infrastructure to accurately measure and compare the execution time of R expressions.",
      "Authors@R": "c(person(\"Olaf\", \"Mersmann\", role=c(\"aut\")), person(\"Claudia\", \"Beleites\", role=c(\"ctb\")), person(\"Rainer\", \"Hurling\", role=c(\"ctb\")), person(\"Ari\", \"Friedman\", role=c(\"ctb\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=\"cre\", email=\"josh.m.ulrich@gmail.com\"))",
      "URL": "https://github.com/joshuaulrich/microbenchmark/",
      "BugReports": "https://github.com/joshuaulrich/microbenchmark/issues/",
      "License": "BSD_2_clause + file LICENSE",
      "Depends": [
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      ],
      "Imports": [
        "graphics",
        "stats"
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      "Suggests": [
        "ggplot2",
        "multcomp",
        "RUnit"
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      "SystemRequirements": "On a Unix-alike, one of the C functions mach_absolute_time (macOS), clock_gettime or gethrtime. If none of these is found, the obsolescent POSIX function gettimeofday will be tried.",
      "ByteCompile": "yes",
      "NeedsCompilation": "yes",
      "Author": "Olaf Mersmann [aut], Claudia Beleites [ctb], Rainer Hurling [ctb], Ari Friedman [ctb], Joshua M. Ulrich [cre]",
      "Maintainer": "Joshua M. Ulrich <josh.m.ulrich@gmail.com>",
      "Repository": "CRAN"
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      "Package": "mime",
      "Version": "0.13",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Map Filenames to MIME Types",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )",
      "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.",
      "Imports": [
        "tools"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/mime",
      "BugReports": "https://github.com/yihui/mime/issues",
      "RoxygenNote": "7.3.2",
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      "NeedsCompilation": "yes",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "RSPM"
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      "Version": "0.1.1.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Shiny UI Widgets for Small Screens",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", role = c(\"cre\", \"aut\"), email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\") )",
      "Description": "Provides UI widget and layout functions for writing Shiny apps that work well on small screens.",
      "License": "GPL-3",
      "LazyData": "TRUE",
      "Imports": [
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        "htmltools (>= 0.3)",
        "utils"
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      "RoxygenNote": "5.0.1",
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      "Version": "1.2.8",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Derivative-Free Optimization Algorithms by Quadratic Approximation",
      "Authors@R": "c(person(given = \"Douglas\", family = \"Bates\", role = \"aut\"), person(given = c(\"Katharine\", \"M.\"), family = \"Mullen\", role = c(\"aut\", \"cre\"), email = \"katharine.mullen@stat.ucla.edu\"), person(given = c(\"John\", \"C.\"), family = \"Nash\", role = \"aut\"), person(given = \"Ravi\", family = \"Varadhan\", role = \"aut\"))",
      "Maintainer": "Katharine M. Mullen <katharine.mullen@stat.ucla.edu>",
      "Description": "Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.",
      "License": "GPL-2",
      "URL": "http://optimizer.r-forge.r-project.org",
      "Imports": [
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      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "SystemRequirements": "GNU make",
      "NeedsCompilation": "yes",
      "Repository": "CRAN",
      "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]"
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      "Source": "Repository",
      "Title": "Modelling Functions that Work with the Pipe",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.",
      "License": "GPL-3",
      "URL": "https://modelr.tidyverse.org, https://github.com/tidyverse/modelr",
      "BugReports": "https://github.com/tidyverse/modelr/issues",
      "Depends": [
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      "Config/Needs/website": "tidyverse/tidytemplate",
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      "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]",
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      "Repository": "CRAN"
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      "Source": "Repository",
      "Type": "Package",
      "Title": "MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format",
      "Authors@R": "person(\"Igor\", \"Dolgalev\", , \"igor.dolgalev@nyumc.org\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4451-126X\"))",
      "Description": "Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al. 2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.",
      "License": "MIT + file LICENSE",
      "URL": "https://igordot.github.io/msigdbr/",
      "BugReports": "https://github.com/igordot/msigdbr/issues",
      "Depends": [
        "R (>= 4.1)"
      ],
      "Imports": [
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        "babelgene (>= 22.9)",
        "dplyr (>= 1.1.1)",
        "lifecycle",
        "methods",
        "rlang",
        "tibble",
        "tidyselect (>= 1.2.0)"
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      "Suggests": [
        "knitr",
        "msigdbdf",
        "rmarkdown",
        "roxygen2",
        "testthat"
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      "Additional_repositories": "https://igordot.r-universe.dev",
      "Config/Needs/website": "rmarkdown",
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      "NeedsCompilation": "no",
      "Author": "Igor Dolgalev [aut, cre] (<https://orcid.org/0000-0003-4451-126X>)",
      "Maintainer": "Igor Dolgalev <igor.dolgalev@nyumc.org>",
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      "Package": "munsell",
      "Version": "0.5.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Utilities for Using Munsell Colours",
      "Author": "Charlotte Wickham <cwickham@gmail.com>",
      "Maintainer": "Charlotte Wickham <cwickham@gmail.com>",
      "Description": "Provides easy access to, and manipulation of, the Munsell  colours. Provides a mapping between Munsell's  original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable  for use directly in R graphics. Also provides utilities  to explore slices through the Munsell colour tree, to transform  Munsell colours and display colour palettes.",
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        "testthat"
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        "colorspace",
        "methods"
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      "Version": "1.3-3",
      "Source": "Repository",
      "Title": "Multivariate Normal and t Distributions",
      "Date": "2025-01-09",
      "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))",
      "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates,  and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae  parameterised by Cholesky factors of covariance or precision matrices are implemented  for interval-censored and exact data, or a mix thereof. Score functions for these  log-likelihoods are available. A class representing multiple lower triangular matrices  and corresponding methods are part of this package.",
      "Imports": [
        "stats"
      ],
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        "R(>= 3.5.0)"
      ],
      "Suggests": [
        "qrng",
        "numDeriv"
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      "License": "GPL-2",
      "URL": "http://mvtnorm.R-forge.R-project.org",
      "NeedsCompilation": "yes",
      "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>), Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>), Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)",
      "Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
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      "Package": "nlme",
      "Version": "3.1-167",
      "Source": "Repository",
      "Date": "2025-01-27",
      "Priority": "recommended",
      "Title": "Linear and Nonlinear Mixed Effects Models",
      "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))",
      "Contact": "see 'MailingList'",
      "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "graphics",
        "stats",
        "utils",
        "lattice"
      ],
      "Suggests": [
        "MASS",
        "SASmixed"
      ],
      "LazyData": "yes",
      "Encoding": "UTF-8",
      "License": "GPL (>= 2)",
      "BugReports": "https://bugs.r-project.org",
      "MailingList": "R-help@r-project.org",
      "URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
      "NeedsCompilation": "yes",
      "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)",
      "Maintainer": "R Core Team <R-core@R-project.org>",
      "Repository": "RSPM"
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      "Package": "nloptr",
      "Version": "2.2.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "R Interface to NLopt",
      "Authors@R": "c(person(\"Jelmer\", \"Ypma\", role = \"aut\", email = \"uctpjyy@ucl.ac.uk\"), person(c(\"Steven\", \"G.\"), \"Johnson\", role = \"aut\", comment = \"author of the NLopt C library\"), person(\"Aymeric\", \"Stamm\", role = c(\"ctb\", \"cre\"), email = \"aymeric.stamm@cnrs.fr\", comment = c(ORCID = \"0000-0002-8725-3654\")), person(c(\"Hans\", \"W.\"), \"Borchers\", role = \"ctb\", email = \"hwborchers@googlemail.com\"), person(\"Dirk\", \"Eddelbuettel\", role = \"ctb\", email = \"edd@debian.org\"), person(\"Brian\", \"Ripley\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Kurt\", \"Hornik\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Julien\", \"Chiquet\", role = \"ctb\"), person(\"Avraham\", \"Adler\", role = \"ctb\",  email = \"Avraham.Adler@gmail.com\", comment = c(ORCID = \"0000-0002-3039-0703\")), person(\"Xiongtao\", \"Dai\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", email = \"jeroen@berkeley.edu\"), person(\"Tomas\", \"Kalibera\", role = \"ctb\"), person(\"Mikael\", \"Jagan\", role = \"ctb\"))",
      "Description": "Solve optimization problems using an R interface to NLopt. NLopt is a  free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. See <https://nlopt.readthedocs.io/en/latest/NLopt_Algorithms/> for more information on the available algorithms. Building from included sources  requires 'CMake'. On Linux and 'macOS', if a suitable system build of  NLopt (2.7.0 or later) is found, it is used; otherwise, it is built  from included sources via 'CMake'. On Windows, NLopt is obtained through  'rwinlib' for 'R <= 4.1.x' or grabbed from the appropriate toolchain for 'R >= 4.2.0'.",
      "License": "LGPL (>= 3)",
      "SystemRequirements": "cmake (>= 3.2.0) which is used only on Linux or macOS systems when no system build of nlopt (>= 2.7.0) can be found.",
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      "URL": "https://github.com/astamm/nloptr, https://astamm.github.io/nloptr/",
      "BugReports": "https://github.com/astamm/nloptr/issues",
      "NeedsCompilation": "yes",
      "UseLTO": "yes",
      "Author": "Jelmer Ypma [aut], Steven G. Johnson [aut] (author of the NLopt C library), Aymeric Stamm [ctb, cre] (<https://orcid.org/0000-0002-8725-3654>), Hans W. Borchers [ctb], Dirk Eddelbuettel [ctb], Brian Ripley [ctb] (build process on multiple OS), Kurt Hornik [ctb] (build process on multiple OS), Julien Chiquet [ctb], Avraham Adler [ctb] (<https://orcid.org/0000-0002-3039-0703>), Xiongtao Dai [ctb], Jeroen Ooms [ctb], Tomas Kalibera [ctb], Mikael Jagan [ctb]",
      "Maintainer": "Aymeric Stamm <aymeric.stamm@cnrs.fr>",
      "Repository": "RSPM"
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      "Version": "7.3-20",
      "Source": "Repository",
      "Priority": "recommended",
      "Date": "2025-01-01",
      "Depends": [
        "R (>= 3.0.0)",
        "stats",
        "utils"
      ],
      "Suggests": [
        "MASS"
      ],
      "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))",
      "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.",
      "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models",
      "ByteCompile": "yes",
      "License": "GPL-2 | GPL-3",
      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
      "NeedsCompilation": "yes",
      "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]",
      "Maintainer": "Brian Ripley <Brian.Ripley@R-project.org>",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
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      "Package": "numDeriv",
      "Version": "2016.8-1.1",
      "Source": "Repository",
      "Title": "Accurate Numerical Derivatives",
      "Description": "Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations  are done using 'Richardson''s' extrapolation or, when applicable, a complex step derivative is available. A simple difference  method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson''s' extrapolation and provides a  useful cross-check.  Methods are provided for real scalar and vector valued functions.",
      "Depends": [
        "R (>= 2.11.1)"
      ],
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "License": "GPL-2",
      "Copyright": "2006-2011, Bank of Canada. 2012-2016, Paul Gilbert",
      "Author": "Paul Gilbert and Ravi Varadhan",
      "Maintainer": "Paul Gilbert <pgilbert.ttv9z@ncf.ca>",
      "URL": "http://optimizer.r-forge.r-project.org/",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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      "Version": "2.3.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL",
      "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Oliver\", \"Keyes\", role = \"ctb\"))",
      "Description": "Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates.  AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions  combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto  calculations on large multibyte integers.",
      "License": "MIT + file LICENSE",
      "URL": "https://jeroen.r-universe.dev/openssl",
      "BugReports": "https://github.com/jeroen/openssl/issues",
      "SystemRequirements": "OpenSSL >= 1.0.2",
      "VignetteBuilder": "knitr",
      "Imports": [
        "askpass"
      ],
      "Suggests": [
        "curl",
        "testthat (>= 2.1.0)",
        "digest",
        "knitr",
        "rmarkdown",
        "jsonlite",
        "jose",
        "sodium"
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      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Oliver Keyes [ctb]",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "RSPM"
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      "Package": "packrat",
      "Version": "0.9.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Dependency Management System for Projects and their R Package Dependencies",
      "Authors@R": "c( person(\"Aron\", \"Atkins\", , \"aron@posit.co\", role = c(\"aut\", \"cre\")), person(\"Toph\", \"Allen\", role = \"aut\"), person(\"Kevin\", \"Ushey\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\"), person(\"Joe\", \"Cheng\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Manage the R packages your project depends on in an isolated, portable, and reproducible way.",
      "License": "GPL-2",
      "URL": "https://github.com/rstudio/packrat",
      "BugReports": "https://github.com/rstudio/packrat/issues",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "tools",
        "utils"
      ],
      "Suggests": [
        "devtools",
        "httr",
        "knitr",
        "mockery",
        "rmarkdown",
        "testthat (>= 3.0.0)"
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      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Aron Atkins [aut, cre], Toph Allen [aut], Kevin Ushey [aut], Jonathan McPherson [aut], Joe Cheng [aut], JJ Allaire [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Aron Atkins <aron@posit.co>",
      "Repository": "CRAN"
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      "Package": "patchwork",
      "Version": "1.3.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "The Composer of Plots",
      "Authors@R": "person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\"))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "The 'ggplot2' package provides a strong API for sequentially  building up a plot, but does not concern itself with composition of multiple plots. 'patchwork' is a package that expands the API to allow for  arbitrarily complex composition of plots by, among others, providing  mathematical operators for combining multiple plots. Other packages that try  to address this need (but with a different approach) are 'gridExtra' and  'cowplot'.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Imports": [
        "ggplot2 (>= 3.0.0)",
        "gtable",
        "grid",
        "stats",
        "grDevices",
        "utils",
        "graphics",
        "rlang (>= 1.0.0)",
        "cli",
        "farver"
      ],
      "RoxygenNote": "7.3.2",
      "URL": "https://patchwork.data-imaginist.com, https://github.com/thomasp85/patchwork",
      "BugReports": "https://github.com/thomasp85/patchwork/issues",
      "Suggests": [
        "knitr",
        "rmarkdown",
        "gridGraphics",
        "gridExtra",
        "ragg",
        "testthat (>= 2.1.0)",
        "vdiffr",
        "covr",
        "png",
        "gt (>= 0.11.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "gifski",
      "NeedsCompilation": "no",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>)",
      "Repository": "CRAN"
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    "pbkrtest": {
      "Package": "pbkrtest",
      "Version": "0.5.3",
      "Source": "Repository",
      "Title": "Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models",
      "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )",
      "Maintainer": "Søren Højsgaard <sorenh@math.aau.dk>",
      "Description": "Computes p-values based on (a) Satterthwaite or Kenward-Rogers degree of freedom methods and (b) parametric bootstrap for mixed effects models as implemented in the 'lme4' package. Implements parametric bootstrap test for generalized linear mixed models as implemented in 'lme4' and generalized linear models. The package is documented in the paper by Halekoh and Højsgaard, (2012, <doi:10.18637/jss.v059.i09>).  Please see 'citation(\"pbkrtest\")' for citation details.",
      "URL": "https://people.math.aau.dk/~sorenh/software/pbkrtest/",
      "Depends": [
        "R (>= 4.2.0)",
        "lme4 (>= 1.1.31)"
      ],
      "Imports": [
        "broom",
        "dplyr",
        "MASS",
        "methods",
        "numDeriv",
        "Matrix (>= 1.2.3)",
        "doBy"
      ],
      "Suggests": [
        "markdown",
        "knitr"
      ],
      "Encoding": "UTF-8",
      "VignetteBuilder": "knitr",
      "License": "GPL (>= 2)",
      "ByteCompile": "Yes",
      "RoxygenNote": "7.3.1",
      "LazyData": "true",
      "NeedsCompilation": "no",
      "Author": "Ulrich Halekoh [aut, cph], Søren Højsgaard [aut, cre, cph]",
      "Repository": "CRAN"
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      "Package": "pillar",
      "Version": "1.10.1",
      "Source": "Repository",
      "Title": "Coloured Formatting for Columns",
      "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))",
      "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.",
      "License": "MIT + file LICENSE",
      "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar",
      "BugReports": "https://github.com/r-lib/pillar/issues",
      "Imports": [
        "cli (>= 2.3.0)",
        "glue",
        "lifecycle",
        "rlang (>= 1.0.2)",
        "utf8 (>= 1.1.0)",
        "utils",
        "vctrs (>= 0.5.0)"
      ],
      "Suggests": [
        "bit64",
        "DBI",
        "debugme",
        "DiagrammeR",
        "dplyr",
        "formattable",
        "ggplot2",
        "knitr",
        "lubridate",
        "nanotime",
        "nycflights13",
        "palmerpenguins",
        "rmarkdown",
        "scales",
        "stringi",
        "survival",
        "testthat (>= 3.1.1)",
        "tibble",
        "units (>= 0.7.2)",
        "vdiffr",
        "withr"
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2.9000",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "true",
      "Config/gha/extra-packages": "DiagrammeR=?ignore-before-r=3.5.0",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], RStudio [cph]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "RSPM"
    },
    "pkgbuild": {
      "Package": "pkgbuild",
      "Version": "1.4.7",
      "Source": "Repository",
      "Title": "Find Tools Needed to Build R Packages",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org",
      "BugReports": "https://github.com/r-lib/pkgbuild/issues",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "callr (>= 3.2.0)",
        "cli (>= 3.4.0)",
        "desc",
        "processx",
        "R6"
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      "Suggests": [
        "covr",
        "cpp11",
        "knitr",
        "Rcpp",
        "rmarkdown",
        "testthat (>= 3.2.0)",
        "withr (>= 2.3.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "RSPM"
    },
    "pkgconfig": {
      "Package": "pkgconfig",
      "Version": "2.0.3",
      "Source": "Repository",
      "Title": "Private Configuration for 'R' Packages",
      "Author": "Gábor Csárdi",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.",
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "Imports": [
        "utils"
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      "Suggests": [
        "covr",
        "testthat",
        "disposables (>= 1.0.3)"
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      "URL": "https://github.com/r-lib/pkgconfig#readme",
      "BugReports": "https://github.com/r-lib/pkgconfig/issues",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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    "pkgdown": {
      "Package": "pkgdown",
      "Version": "2.1.1",
      "Source": "Repository",
      "Title": "Make Static HTML Documentation for a Package",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jay\", \"Hesselberth\", role = \"aut\", comment = c(ORCID = \"0000-0002-6299-179X\")), person(\"Maëlle\", \"Salmon\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Salim\", \"Brüggemann\", role = \"aut\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Generate an attractive and useful website from a source package.  'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.",
      "License": "MIT + file LICENSE",
      "URL": "https://pkgdown.r-lib.org/, https://github.com/r-lib/pkgdown",
      "BugReports": "https://github.com/r-lib/pkgdown/issues",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Imports": [
        "bslib (>= 0.5.1)",
        "callr (>= 3.7.3)",
        "cli (>= 3.6.1)",
        "desc (>= 1.4.0)",
        "digest",
        "downlit (>= 0.4.4)",
        "fontawesome",
        "fs (>= 1.4.0)",
        "httr2 (>= 1.0.2)",
        "jsonlite",
        "openssl",
        "purrr (>= 1.0.0)",
        "ragg",
        "rlang (>= 1.1.0)",
        "rmarkdown (>= 2.27)",
        "tibble",
        "whisker",
        "withr (>= 2.4.3)",
        "xml2 (>= 1.3.1)",
        "yaml"
      ],
      "Suggests": [
        "covr",
        "diffviewer",
        "evaluate (>= 0.24.0)",
        "gert",
        "gt",
        "htmltools",
        "htmlwidgets",
        "knitr",
        "lifecycle",
        "magick",
        "methods",
        "pkgload (>= 1.0.2)",
        "quarto",
        "rsconnect",
        "rstudioapi",
        "rticles",
        "sass",
        "testthat (>= 3.1.3)",
        "tools"
      ],
      "VignetteBuilder": "knitr, quarto",
      "Config/Needs/website": "usethis, servr",
      "Config/potools/style": "explicit",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "build-article, build-quarto-article, build-reference",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "pandoc",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>), Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>), Olivier Roy [aut], Salim Brüggemann [aut] (<https://orcid.org/0000-0002-5329-5987>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "RSPM"
    },
    "pkgload": {
      "Package": "pkgload",
      "Version": "1.4.0",
      "Source": "Repository",
      "Title": "Simulate Package Installation and Attach",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )",
      "Description": "Simulates the process of installing a package and then attaching it. This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.",
      "License": "GPL-3",
      "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org",
      "BugReports": "https://github.com/r-lib/pkgload/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
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        "desc",
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        "glue",
        "lifecycle",
        "methods",
        "pkgbuild",
        "processx",
        "rlang (>= 1.1.1)",
        "rprojroot",
        "utils",
        "withr (>= 2.4.3)"
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      "Suggests": [
        "bitops",
        "jsonlite",
        "mathjaxr",
        "pak",
        "Rcpp",
        "remotes",
        "rstudioapi",
        "testthat (>= 3.2.1.1)",
        "usethis"
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      "Config/Needs/website": "tidyverse/tidytemplate, ggplot2",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Config/testthat/start-first": "dll",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
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      "Package": "plogr",
      "Version": "0.2.0",
      "Source": "Repository",
      "Title": "The 'plog' C++ Logging Library",
      "Date": "2018-03-24",
      "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"krlmlr+r@mailbox.org\"), person(\"Sergey\", \"Podobry\", role = \"cph\", comment = \"Author of the bundled plog library\"))",
      "Description": "A simple header-only logging library for C++. Add 'LinkingTo: plogr' to 'DESCRIPTION', and '#include <plogr.h>' in your C++ modules to use it.",
      "Suggests": [
        "Rcpp"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "URL": "https://github.com/krlmlr/plogr#readme",
      "BugReports": "https://github.com/krlmlr/plogr/issues",
      "RoxygenNote": "6.0.1.9000",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre], Sergey Podobry [cph] (Author of the bundled plog library)",
      "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
      "Repository": "CRAN"
    },
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      "Package": "plotly",
      "Version": "4.10.4",
      "Source": "Repository",
      "Title": "Create Interactive Web Graphics via 'plotly.js'",
      "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))",
      "License": "MIT + file LICENSE",
      "Description": "Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.",
      "URL": "https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/",
      "BugReports": "https://github.com/plotly/plotly.R/issues",
      "Depends": [
        "R (>= 3.2.0)",
        "ggplot2 (>= 3.0.0)"
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        "magrittr",
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        "viridisLite",
        "base64enc",
        "htmltools (>= 0.3.6)",
        "htmlwidgets (>= 1.5.2.9001)",
        "tidyr (>= 1.0.0)",
        "RColorBrewer",
        "dplyr",
        "vctrs",
        "tibble",
        "lazyeval (>= 0.2.0)",
        "rlang (>= 0.4.10)",
        "crosstalk",
        "purrr",
        "data.table",
        "promises"
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        "maps",
        "hexbin",
        "ggthemes",
        "GGally",
        "ggalluvial",
        "testthat",
        "knitr",
        "shiny (>= 1.1.0)",
        "shinytest (>= 1.3.0)",
        "curl",
        "rmarkdown",
        "Cairo",
        "broom",
        "webshot",
        "listviewer",
        "dendextend",
        "sf",
        "png",
        "IRdisplay",
        "processx",
        "plotlyGeoAssets",
        "forcats",
        "withr",
        "palmerpenguins",
        "rversions",
        "reticulate",
        "rsvg"
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      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "Config/Needs/check": "tidyverse/ggplot2, rcmdcheck, devtools, reshape2",
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (<https://orcid.org/0000-0002-1994-3581>), Pedro Despouy [aut], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Plotly Technologies Inc. [cph]",
      "Maintainer": "Carson Sievert <cpsievert1@gmail.com>",
      "Repository": "CRAN"
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      "Package": "plyr",
      "Version": "1.8.9",
      "Source": "Repository",
      "Title": "Tools for Splitting, Applying and Combining Data",
      "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))",
      "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together.  For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.",
      "License": "MIT + file LICENSE",
      "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr",
      "BugReports": "https://github.com/hadley/plyr/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "Rcpp (>= 0.11.0)"
      ],
      "Suggests": [
        "abind",
        "covr",
        "doParallel",
        "foreach",
        "iterators",
        "itertools",
        "tcltk",
        "testthat"
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      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
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      "Version": "0.1-8",
      "Source": "Repository",
      "Title": "Read and write PNG images",
      "Author": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Depends": [
        "R (>= 2.9.0)"
      ],
      "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.",
      "License": "GPL-2 | GPL-3",
      "SystemRequirements": "libpng",
      "URL": "http://www.rforge.net/png/",
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      "Repository": "CRAN"
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      "Version": "1.10-7",
      "Source": "Repository",
      "Date": "2024-07-23",
      "Title": "Polygon Clipping",
      "Authors@R": "c(person(\"Angus\", \"Johnson\", role = \"aut\",  comment=\"C++ original, http://www.angusj.com/delphi/clipper.php\"), person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"trl\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\"), person(\"Kurt\", \"Hornik\", role = \"ctb\"), person(c(\"Brian\", \"D.\"), \"Ripley\", role = \"ctb\"), person(\"Elliott\", \"Sales de Andrade\", role=\"ctb\"), person(\"Paul\", \"Murrell\", role = \"ctb\"), person(\"Ege\", \"Rubak\", role=\"ctb\"), person(\"Mark\", \"Padgham\", role=\"ctb\"))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Description": "R port of Angus Johnson's open source library 'Clipper'. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.",
      "License": "BSL",
      "URL": "https://www.angusj.com, https://sourceforge.net/projects/polyclipping, https://github.com/baddstats/polyclip",
      "BugReports": "https://github.com/baddstats/polyclip/issues",
      "ByteCompile": "true",
      "Note": "built from Clipper C++ version 6.4.0",
      "NeedsCompilation": "yes",
      "Author": "Angus Johnson [aut] (C++ original, http://www.angusj.com/delphi/clipper.php), Adrian Baddeley [aut, trl, cre], Kurt Hornik [ctb], Brian D. Ripley [ctb], Elliott Sales de Andrade [ctb], Paul Murrell [ctb], Ege Rubak [ctb], Mark Padgham [ctb]",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
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      "Version": "1.4-1",
      "Source": "Repository",
      "Title": "A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations",
      "Authors@R": "c(person(\"Bill\", \"Venables\", role = c(\"aut\", \"cre\"), email = \"Bill.Venables@gmail.com\", comment = \"S original\"), person(\"Kurt\", \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = \"R port\"), person(\"Martin\", \"Maechler\", role = \"aut\", email = \"maechler@stat.math.ethz.ch\", comment = \"R port\"))",
      "Description": "A collection of functions to implement a class for univariate polynomial manipulations.",
      "Imports": [
        "stats",
        "graphics"
      ],
      "License": "GPL-2",
      "NeedsCompilation": "no",
      "Author": "Bill Venables [aut, cre] (S original), Kurt Hornik [aut] (R port), Martin Maechler [aut] (R port)",
      "Maintainer": "Bill Venables <Bill.Venables@gmail.com>",
      "Suggests": [
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        "rmarkdown"
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      "VignetteBuilder": "knitr",
      "Repository": "CRAN"
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      "Version": "1.0.0",
      "Source": "Repository",
      "Title": "Praise Users",
      "Author": "Gabor Csardi, Sindre Sorhus",
      "Maintainer": "Gabor Csardi <csardi.gabor@gmail.com>",
      "Description": "Build friendly R packages that praise their users if they have done something good, or they just need it to feel better.",
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "URL": "https://github.com/gaborcsardi/praise",
      "BugReports": "https://github.com/gaborcsardi/praise/issues",
      "Suggests": [
        "testthat"
      ],
      "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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      "Package": "prettyunits",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Pretty, Human Readable Formatting of Quantities",
      "Authors@R": "c( person(\"Gabor\", \"Csardi\", email=\"csardi.gabor@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email=\"wdenney@humanpredictions.com\", role=c(\"ctb\"), comment=c(ORCID=\"0000-0002-5759-428X\")), person(\"Christophe\", \"Regouby\", email=\"christophe.regouby@free.fr\", role=c(\"ctb\")) )",
      "Description": "Pretty, human readable formatting of quantities. Time intervals: '1337000' -> '15d 11h 23m 20s'. Vague time intervals: '2674000' -> 'about a month ago'. Bytes: '1337' -> '1.34 kB'. Rounding: '99' with 3 significant digits -> '99.0' p-values: '0.00001' -> '<0.0001'. Colors: '#FF0000' -> 'red'. Quantities: '1239437' -> '1.24 M'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/prettyunits",
      "BugReports": "https://github.com/r-lib/prettyunits/issues",
      "Depends": [
        "R(>= 2.10)"
      ],
      "Suggests": [
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        "covr",
        "testthat"
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      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Gabor Csardi [aut, cre], Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>), Christophe Regouby [ctb]",
      "Maintainer": "Gabor Csardi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
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      "Package": "processx",
      "Version": "3.8.6",
      "Source": "Repository",
      "Title": "Execute and Control System Processes",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools to run system processes in the background.  It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.",
      "License": "MIT + file LICENSE",
      "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx",
      "BugReports": "https://github.com/r-lib/processx/issues",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
        "ps (>= 1.2.0)",
        "R6",
        "utils"
      ],
      "Suggests": [
        "callr (>= 3.7.3)",
        "cli (>= 3.3.0)",
        "codetools",
        "covr",
        "curl",
        "debugme",
        "parallel",
        "rlang (>= 1.0.2)",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1.9000",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "RSPM"
    },
    "profvis": {
      "Package": "profvis",
      "Version": "0.4.0",
      "Source": "Repository",
      "Title": "Interactive Visualizations for Profiling R Code",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Javier\", \"Luraschi\", role = \"aut\"), person(\"Timothy\", \"Mastny\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/htmlwidgets/lib/jquery/AUTHORS.txt\"), person(\"Mike\", \"Bostock\", role = c(\"ctb\", \"cph\"), comment = \"D3 library\"), person(, \"D3 contributors\", role = \"ctb\", comment = \"D3 library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\") )",
      "Description": "Interactive visualizations for profiling R code.",
      "License": "MIT + file LICENSE",
      "URL": "https://profvis.r-lib.org, https://github.com/r-lib/profvis",
      "BugReports": "https://github.com/r-lib/profvis/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Imports": [
        "htmlwidgets (>= 0.3.2)",
        "rlang (>= 1.1.0)",
        "vctrs"
      ],
      "Suggests": [
        "htmltools",
        "knitr",
        "rmarkdown",
        "shiny",
        "testthat (>= 3.0.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate, rmarkdown",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre], Winston Chang [aut], Javier Luraschi [aut], Timothy Mastny [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/htmlwidgets/lib/jquery/AUTHORS.txt), Mike Bostock [ctb, cph] (D3 library), D3 contributors [ctb] (D3 library), Ivan Sagalaev [ctb, cph] (highlight.js library)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "RSPM"
    },
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      "Version": "1.2.3",
      "Source": "Repository",
      "Title": "Terminal Progress Bars",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Rich\", \"FitzJohn\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/progress#readme, http://r-lib.github.io/progress/",
      "BugReports": "https://github.com/r-lib/progress/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "crayon",
        "hms",
        "prettyunits",
        "R6"
      ],
      "Suggests": [
        "Rcpp",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Rich FitzJohn [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "promises": {
      "Package": "promises",
      "Version": "1.3.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Abstractions for Promise-Based Asynchronous Programming",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides fundamental abstractions for doing asynchronous programming in R using promises. Asynchronous programming is useful for allowing a single R process to orchestrate multiple tasks in the background while also attending to something else. Semantics are similar to 'JavaScript' promises, but with a syntax that is idiomatic R.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/promises/, https://github.com/rstudio/promises",
      "BugReports": "https://github.com/rstudio/promises/issues",
      "Imports": [
        "fastmap (>= 1.1.0)",
        "later",
        "magrittr (>= 1.5)",
        "R6",
        "Rcpp",
        "rlang",
        "stats"
      ],
      "Suggests": [
        "future (>= 1.21.0)",
        "knitr",
        "purrr",
        "rmarkdown",
        "spelling",
        "testthat",
        "vembedr"
      ],
      "LinkingTo": [
        "later",
        "Rcpp"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "rsconnect",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Joe Cheng <joe@posit.co>",
      "Repository": "RSPM"
    },
    "ps": {
      "Package": "ps",
      "Version": "1.9.0",
      "Source": "Repository",
      "Title": "List, Query, Manipulate System Processes",
      "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/",
      "BugReports": "https://github.com/r-lib/ps/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "callr",
        "covr",
        "curl",
        "pillar",
        "pingr",
        "processx (>= 3.1.0)",
        "R6",
        "rlang",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
      ],
      "Biarch": "true",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "RSPM"
    },
    "purrr": {
      "Package": "purrr",
      "Version": "1.0.4",
      "Source": "Repository",
      "Title": "Functional Programming Tools",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
      "Description": "A complete and consistent functional programming toolkit for R.",
      "License": "MIT + file LICENSE",
      "URL": "https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr",
      "BugReports": "https://github.com/tidyverse/purrr/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
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        "cli (>= 3.6.1)",
        "lifecycle (>= 1.0.3)",
        "magrittr (>= 1.5.0)",
        "rlang (>= 1.1.1)",
        "vctrs (>= 0.6.3)"
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        "dplyr (>= 0.7.8)",
        "httr",
        "knitr",
        "lubridate",
        "rmarkdown",
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        "tibble",
        "tidyselect"
      ],
      "LinkingTo": [
        "cli"
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      "VignetteBuilder": "knitr",
      "Biarch": "true",
      "Config/build/compilation-database": "true",
      "Config/Needs/website": "tidyverse/tidytemplate, tidyr",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
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      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Lionel Henry [aut], Posit Software, PBC [cph, fnd] (03wc8by49)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "RSPM"
    },
    "quantreg": {
      "Package": "quantreg",
      "Version": "6.1",
      "Source": "Repository",
      "Title": "Quantile Regression",
      "Description": "Estimation and inference methods for models for conditional quantile functions:  Linear and nonlinear parametric and non-parametric (total variation penalized) models  for conditional quantiles of a univariate response and several methods for handling censored survival data.  Portfolio selection methods based on expected shortfall risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press, <doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,  CRC Press, <doi:10.1201/9781315120256>.",
      "Authors@R": "c( person(\"Roger\", \"Koenker\",  role = c(\"cre\",\"aut\"), email =  \"rkoenker@illinois.edu\"), person(\"Stephen\", \"Portnoy\",  role = c(\"ctb\"),  comment = \"Contributions to Censored QR code\", email =  \"sportnoy@illinois.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\",  role = c(\"ctb\"),  comment = \"Contributions to Sparse QR code\", email =  \"pin.ng@nau.edu\"), person(\"Blaise\", \"Melly\",  role = c(\"ctb\"),  comment = \"Contributions to preprocessing code\", email =  \"mellyblaise@gmail.com\"), person(\"Achim\", \"Zeileis\",  role = c(\"ctb\"),  comment = \"Contributions to dynrq code essentially identical to his dynlm code\",  email =  \"Achim.Zeileis@uibk.ac.at\"), person(\"Philip\", \"Grosjean\",  role = c(\"ctb\"),  comment = \"Contributions to nlrq code\", email =  \"phgrosjean@sciviews.org\"), person(\"Cleve\", \"Moler\",  role = c(\"ctb\"),  comment = \"author of several linpack routines\"), person(\"Yousef\", \"Saad\",  role = c(\"ctb\"),  comment = \"author of sparskit2\"), person(\"Victor\", \"Chernozhukov\",  role = c(\"ctb\"),  comment = \"contributions to extreme value inference code\"), person(\"Ivan\", \"Fernandez-Val\",  role = c(\"ctb\"),  comment = \"contributions to extreme value inference code\"), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"tweaks (src/chlfct.f, 'tiny','Large')\", ORCID = \"0000-0002-8685-9910\")), person(c(\"Brian\", \"D\"), \"Ripley\",  role = c(\"trl\",\"ctb\"),  comment = \"Initial (2001) R port from S (to my everlasting shame --  how could I have been so slow to adopt R!) and for numerous other  suggestions and useful advice\", email =  \"ripley@stats.ox.ac.uk\"))",
      "Maintainer": "Roger Koenker <rkoenker@illinois.edu>",
      "Repository": "RSPM",
      "Depends": [
        "R (>= 3.5)",
        "stats",
        "SparseM"
      ],
      "Imports": [
        "methods",
        "graphics",
        "Matrix",
        "MatrixModels",
        "survival",
        "MASS"
      ],
      "Suggests": [
        "interp",
        "rgl",
        "logspline",
        "nor1mix",
        "Formula",
        "zoo",
        "R.rsp",
        "conquer"
      ],
      "License": "GPL (>= 2)",
      "URL": "https://www.r-project.org",
      "NeedsCompilation": "yes",
      "VignetteBuilder": "R.rsp",
      "Author": "Roger Koenker [cre, aut], Stephen Portnoy [ctb] (Contributions to Censored QR code), Pin Tian Ng [ctb] (Contributions to Sparse QR code), Blaise Melly [ctb] (Contributions to preprocessing code), Achim Zeileis [ctb] (Contributions to dynrq code essentially identical to his dynlm code), Philip Grosjean [ctb] (Contributions to nlrq code), Cleve Moler [ctb] (author of several linpack routines), Yousef Saad [ctb] (author of sparskit2), Victor Chernozhukov [ctb] (contributions to extreme value inference code), Ivan Fernandez-Val [ctb] (contributions to extreme value inference code), Martin Maechler [ctb] (tweaks (src/chlfct.f, 'tiny','Large'), <https://orcid.org/0000-0002-8685-9910>), Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice)",
      "Encoding": "UTF-8"
    },
    "qvalue": {
      "Package": "qvalue",
      "Version": "2.34.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "Q-value estimation for false discovery rate control",
      "Date": "2015-03-24",
      "Authors@R": "as.person(c( \"John D. Storey <jdstorey@princeton.edu> [aut, cre]\",  \"Andrew J. Bass <ajbass@emory.edu> [aut]\",  \"Alan Dabney [aut]\", \"David Robinson [aut]\", \"Gregory Warnes [ctb]\" ))",
      "Maintainer": "John D. Storey <jstorey@princeton.edu>, Andrew J. Bass <ajbass@emory.edu>",
      "biocViews": "MultipleComparisons",
      "Description": "This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values and local FDR values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. The local FDR measures the posterior probability the null hypothesis is true given the test's p-value. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.",
      "VignetteBuilder": "knitr",
      "Imports": [
        "splines",
        "ggplot2",
        "grid",
        "reshape2"
      ],
      "Suggests": [
        "knitr"
      ],
      "Depends": [
        "R(>= 2.10)"
      ],
      "URL": "http://github.com/jdstorey/qvalue",
      "License": "LGPL",
      "RoxygenNote": "5.0.1",
      "git_url": "https://git.bioconductor.org/packages/qvalue",
      "git_branch": "RELEASE_3_18",
      "git_last_commit": "92e1f55",
      "git_last_commit_date": "2023-10-24",
      "NeedsCompilation": "no",
      "Author": "John D. Storey [aut, cre], Andrew J. Bass [aut], Alan Dabney [aut], David Robinson [aut], Gregory Warnes [ctb]"
    },
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      "Package": "ragg",
      "Version": "1.3.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Graphic Devices Based on AGG",
      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Description": "Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.",
      "License": "MIT + file LICENSE",
      "URL": "https://ragg.r-lib.org, https://github.com/r-lib/ragg",
      "BugReports": "https://github.com/r-lib/ragg/issues",
      "Imports": [
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        "textshaping (>= 0.3.0)"
      ],
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        "testthat (>= 3.0.0)"
      ],
      "LinkingTo": [
        "systemfonts",
        "textshaping"
      ],
      "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "SystemRequirements": "freetype2, libpng, libtiff, libjpeg",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit, PBC [cph, fnd]",
      "Repository": "RSPM"
    },
    "rappdirs": {
      "Package": "rappdirs",
      "Version": "0.3.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs",
      "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = c(\"trl\", \"cre\", \"cph\"), email = \"hadley@rstudio.com\"), person(given = \"RStudio\", role = \"cph\"), person(given = \"Sridhar\", family = \"Ratnakumar\", role = \"aut\"), person(given = \"Trent\", family = \"Mick\", role = \"aut\"), person(given = \"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(given = \"Eddy\", family = \"Petrisor\", role = \"ctb\"), person(given = \"Trevor\", family = \"Davis\", role = c(\"trl\", \"aut\")), person(given = \"Gabor\", family = \"Csardi\", role = \"ctb\"), person(given = \"Gregory\", family = \"Jefferis\", role = \"ctb\"))",
      "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' (<https://github.com/ActiveState/appdirs>) to R.",
      "License": "MIT + file LICENSE",
      "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs",
      "BugReports": "https://github.com/r-lib/rappdirs/issues",
      "Depends": [
        "R (>= 3.2)"
      ],
      "Suggests": [
        "roxygen2",
        "testthat (>= 3.0.0)",
        "covr",
        "withr"
      ],
      "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "rbibutils": {
      "Package": "rbibutils",
      "Version": "2.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Read 'Bibtex' Files and Convert Between Bibliography Formats",
      "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\",  role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = \"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\" ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )",
      "Description": "Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'.  Includes a port of the 'bibutils' utilities by Chris Putnam <https://sourceforge.net/projects/bibutils/>. Supports all bibliography formats and character encodings implemented in 'bibutils'.",
      "License": "GPL-2",
      "URL": "https://geobosh.github.io/rbibutils/ (doc), https://github.com/GeoBosh/rbibutils (devel)",
      "BugReports": "https://github.com/GeoBosh/rbibutils/issues",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Imports": [
        "utils",
        "tools"
      ],
      "Suggests": [
        "testthat"
      ],
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Config/Needs/memcheck": "devtools, rcmdcheck",
      "Author": "Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)",
      "Maintainer": "Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>",
      "Repository": "RSPM"
    },
    "rcmdcheck": {
      "Package": "rcmdcheck",
      "Version": "1.4.0",
      "Source": "Repository",
      "Title": "Run 'R CMD check' from 'R' and Capture Results",
      "Authors@R": "person(given = \"Gábor\", family = \"Csárdi\", role = c(\"cre\", \"aut\"), email = \"csardi.gabor@gmail.com\")",
      "Description": "Run 'R CMD check' from 'R' and capture the results of the individual checks. Supports running checks in the background, timeouts, pretty printing and comparing check results.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.github.io/rcmdcheck/, https://github.com/r-Lib/rcmdcheck#readme",
      "BugReports": "https://github.com/r-Lib/rcmdcheck/issues",
      "Imports": [
        "callr (>= 3.1.1.9000)",
        "cli (>= 3.0.0)",
        "curl",
        "desc (>= 1.2.0)",
        "digest",
        "pkgbuild",
        "prettyunits",
        "R6",
        "rprojroot",
        "sessioninfo (>= 1.1.1)",
        "utils",
        "withr",
        "xopen"
      ],
      "Suggests": [
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        "knitr",
        "mockery",
        "processx",
        "ps",
        "rmarkdown",
        "svglite",
        "testthat",
        "webfakes"
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      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.2",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [cre, aut]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "readr": {
      "Package": "readr",
      "Version": "2.1.5",
      "Source": "Repository",
      "Title": "Read Rectangular Text Data",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )",
      "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf').  It is designed to flexibly parse many types of data found in the wild, while still cleanly failing when data unexpectedly changes.",
      "License": "MIT + file LICENSE",
      "URL": "https://readr.tidyverse.org, https://github.com/tidyverse/readr",
      "BugReports": "https://github.com/tidyverse/readr/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli (>= 3.2.0)",
        "clipr",
        "crayon",
        "hms (>= 0.4.1)",
        "lifecycle (>= 0.2.0)",
        "methods",
        "R6",
        "rlang",
        "tibble",
        "utils",
        "vroom (>= 1.6.0)"
      ],
      "Suggests": [
        "covr",
        "curl",
        "datasets",
        "knitr",
        "rmarkdown",
        "spelling",
        "stringi",
        "testthat (>= 3.2.0)",
        "tzdb (>= 0.1.1)",
        "waldo",
        "withr",
        "xml2"
      ],
      "LinkingTo": [
        "cpp11",
        "tzdb (>= 0.1.1)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "false",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [ctb, cph] (grisu3 implementation), Mikkel Jørgensen [ctb, cph] (grisu3 implementation)",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "readxl": {
      "Package": "readxl",
      "Version": "1.4.5",
      "Source": "Repository",
      "Title": "Read Excel Files",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = \"Copyright holder of all R code and all C/C++ code without explicit copyright attribution\"), person(\"Marcin\", \"Kalicinski\", role = c(\"ctb\", \"cph\"), comment = \"Author of included RapidXML code\"), person(\"Komarov Valery\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"Christophe Leitienne\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"Bob Colbert\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"David Hoerl\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"Evan Miller\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\") )",
      "Description": "Import excel files into R. Supports '.xls' via the embedded 'libxls' C library <https://github.com/libxls/libxls> and '.xlsx' via the embedded 'RapidXML' C++ library <https://rapidxml.sourceforge.net/>. Works on Windows, Mac and Linux without external dependencies.",
      "License": "MIT + file LICENSE",
      "URL": "https://readxl.tidyverse.org, https://github.com/tidyverse/readxl",
      "BugReports": "https://github.com/tidyverse/readxl/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cellranger",
        "tibble (>= 2.0.1)",
        "utils"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rmarkdown",
        "testthat (>= 3.1.6)",
        "withr"
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      "LinkingTo": [
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        "progress"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate, tidyverse",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Note": "libxls v1.6.3 c199d13",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Posit, PBC [cph, fnd] (Copyright holder of all R code and all C/C++ code without explicit copyright attribution), Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Komarov Valery [ctb, cph] (Author of included libxls code), Christophe Leitienne [ctb, cph] (Author of included libxls code), Bob Colbert [ctb, cph] (Author of included libxls code), David Hoerl [ctb, cph] (Author of included libxls code), Evan Miller [ctb, cph] (Author of included libxls code)",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "RSPM"
    },
    "reformulas": {
      "Package": "reformulas",
      "Version": "0.4.0",
      "Source": "Repository",
      "Title": "Machinery for Processing Random Effect Formulas",
      "Authors@R": "person(given = \"Ben\", family = \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\"))",
      "Description": "Takes formulas including random-effects components (formatted as in 'lme4', 'glmmTMB', etc.) and processes them. Includes various helper functions.",
      "URL": "https://github.com/bbolker/reformulas",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "Imports": [
        "stats",
        "methods",
        "Matrix",
        "Rdpack"
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      "RdMacros": "Rdpack",
      "Suggests": [
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        "tinytest"
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      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>)",
      "Maintainer": "Ben Bolker <bolker@mcmaster.ca>",
      "Repository": "RSPM"
    },
    "rematch": {
      "Package": "rematch",
      "Version": "2.0.0",
      "Source": "Repository",
      "Title": "Match Regular Expressions with a Nicer 'API'",
      "Author": "Gabor Csardi",
      "Maintainer": "Gabor Csardi <csardi.gabor@gmail.com>",
      "Description": "A small wrapper on 'regexpr' to extract the matches and captured groups from the match of a regular expression to a character vector.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/gaborcsardi/rematch",
      "BugReports": "https://github.com/gaborcsardi/rematch/issues",
      "RoxygenNote": "5.0.1.9000",
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        "testthat"
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      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "rematch2": {
      "Package": "rematch2",
      "Version": "2.1.2",
      "Source": "Repository",
      "Title": "Tidy Output from Regular Expression Matching",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", email = \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Matthew\", \"Lincoln\", email = \"matthew.d.lincoln@gmail.com\", role = c(\"ctb\")))",
      "Description": "Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames.",
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "URL": "https://github.com/r-lib/rematch2#readme",
      "BugReports": "https://github.com/r-lib/rematch2/issues",
      "RoxygenNote": "7.1.0",
      "Imports": [
        "tibble"
      ],
      "Suggests": [
        "covr",
        "testthat"
      ],
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Matthew Lincoln [ctb]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "remotes": {
      "Package": "remotes",
      "Version": "2.5.0",
      "Source": "Repository",
      "Title": "R Package Installation from Remote Repositories, Including 'GitHub'",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Martin\", \"Morgan\", role = \"aut\"), person(\"Dan\", \"Tenenbaum\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = \"cph\") )",
      "Description": "Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories.  This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.",
      "License": "MIT + file LICENSE",
      "URL": "https://remotes.r-lib.org, https://github.com/r-lib/remotes#readme",
      "BugReports": "https://github.com/r-lib/remotes/issues",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "methods",
        "stats",
        "tools",
        "utils"
      ],
      "Suggests": [
        "brew",
        "callr",
        "codetools",
        "covr",
        "curl",
        "git2r (>= 0.23.0)",
        "knitr",
        "mockery",
        "pingr",
        "pkgbuild (>= 1.0.1)",
        "rmarkdown",
        "rprojroot",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "Subversion for install_svn, git for install_git",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
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      "Version": "1.1.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Project Environments",
      "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@rstudio.com\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/renv/, https://github.com/rstudio/renv",
      "BugReports": "https://github.com/rstudio/renv/issues",
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "BiocManager",
        "cli",
        "compiler",
        "covr",
        "cpp11",
        "devtools",
        "gitcreds",
        "jsonlite",
        "jsonvalidate",
        "knitr",
        "miniUI",
        "modules",
        "packrat",
        "pak",
        "R6",
        "remotes",
        "reticulate",
        "rmarkdown",
        "rstudioapi",
        "shiny",
        "testthat",
        "uuid",
        "waldo",
        "yaml",
        "webfakes"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes",
      "NeedsCompilation": "no",
      "Author": "Kevin Ushey [aut, cre] (<https://orcid.org/0000-0003-2880-7407>), Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Kevin Ushey <kevin@rstudio.com>",
      "Repository": "RSPM"
    },
    "reprex": {
      "Package": "reprex",
      "Version": "2.1.1",
      "Source": "Repository",
      "Title": "Prepare Reproducible Example Code via the Clipboard",
      "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"David\", \"Robinson\", , \"admiral.david@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Convenience wrapper that uses the 'rmarkdown' package to render small snippets of code to target formats that include both code and output.  The goal is to encourage the sharing of small, reproducible, and runnable examples on code-oriented websites, such as <https://stackoverflow.com> and <https://github.com>, or in email. The user's clipboard is the default source of input code and the default target for rendered output. 'reprex' also extracts clean, runnable R code from various common formats, such as copy/paste from an R session.",
      "License": "MIT + file LICENSE",
      "URL": "https://reprex.tidyverse.org, https://github.com/tidyverse/reprex",
      "BugReports": "https://github.com/tidyverse/reprex/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "callr (>= 3.6.0)",
        "cli (>= 3.2.0)",
        "clipr (>= 0.4.0)",
        "fs",
        "glue",
        "knitr (>= 1.23)",
        "lifecycle",
        "rlang (>= 1.0.0)",
        "rmarkdown",
        "rstudioapi",
        "utils",
        "withr (>= 2.3.0)"
      ],
      "Suggests": [
        "covr",
        "fortunes",
        "miniUI",
        "rprojroot",
        "sessioninfo",
        "shiny",
        "spelling",
        "styler (>= 1.2.0)",
        "testthat (>= 3.2.1)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "dplyr, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Config/testthat/start-first": "knitr-options, venues, reprex",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "pandoc (>= 2.0) - https://pandoc.org/",
      "NeedsCompilation": "no",
      "Author": "Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), David Robinson [aut], Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "reshape2": {
      "Package": "reshape2",
      "Version": "1.4.4",
      "Source": "Repository",
      "Title": "Flexibly Reshape Data: A Reboot of the Reshape Package",
      "Author": "Hadley Wickham <h.wickham@gmail.com>",
      "Maintainer": "Hadley Wickham <h.wickham@gmail.com>",
      "Description": "Flexibly restructure and aggregate data using just two functions: melt and 'dcast' (or 'acast').",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/hadley/reshape",
      "BugReports": "https://github.com/hadley/reshape/issues",
      "Depends": [
        "R (>= 3.1)"
      ],
      "Imports": [
        "plyr (>= 1.8.1)",
        "Rcpp",
        "stringr"
      ],
      "Suggests": [
        "covr",
        "lattice",
        "testthat (>= 0.8.0)"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.1.0",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Version": "1.42.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Interface to 'Python'",
      "Authors@R": "c( person(\"Tomasz\", \"Kalinowski\", role = c(\"ctb\", \"cre\"), email = \"tomasz@posit.co\"), person(\"Kevin\", \"Ushey\", role = c(\"aut\"), email = \"kevin@posit.co\"), person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@posit.co\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")), person(\"Yuan\", \"Tang\", role = c(\"aut\", \"cph\"), email = \"terrytangyuan@gmail.com\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"ctb\", \"cph\"), email = \"edd@debian.org\"), person(\"Bryan\", \"Lewis\", role = c(\"ctb\", \"cph\"), email = \"blewis@illposed.net\"), person(\"Sigrid\", \"Keydana\", role = c(\"ctb\"), email = \"sigrid@posit.co\"), person(\"Ryan\", \"Hafen\", role = c(\"ctb\", \"cph\"), email = \"rhafen@gmail.com\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyThread library, http://tinythreadpp.bitsnbites.eu/\") )",
      "Description": "Interface to 'Python' modules, classes, and functions. When calling into 'Python', R data types are automatically converted to their equivalent 'Python' types. When values are returned from 'Python' to R they are converted back to R types. Compatible with all versions of 'Python' >= 2.7.",
      "License": "Apache License 2.0",
      "URL": "https://rstudio.github.io/reticulate/, https://github.com/rstudio/reticulate",
      "BugReports": "https://github.com/rstudio/reticulate/issues",
      "SystemRequirements": "Python (>= 2.7.0)",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "Matrix",
        "Rcpp (>= 1.0.7)",
        "RcppTOML",
        "graphics",
        "here",
        "jsonlite",
        "methods",
        "png",
        "rappdirs",
        "utils",
        "rlang",
        "withr"
      ],
      "Suggests": [
        "callr",
        "knitr",
        "glue",
        "cli",
        "rmarkdown",
        "pillar",
        "testthat"
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      "LinkingTo": [
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      "RoxygenNote": "7.3.2",
      "VignetteBuilder": "knitr",
      "Config/build/compilation-database": "true",
      "NeedsCompilation": "yes",
      "Author": "Tomasz Kalinowski [ctb, cre], Kevin Ushey [aut], JJ Allaire [aut], RStudio [cph, fnd], Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>), Dirk Eddelbuettel [ctb, cph], Bryan Lewis [ctb, cph], Sigrid Keydana [ctb], Ryan Hafen [ctb, cph], Marcus Geelnard [ctb, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/)",
      "Maintainer": "Tomasz Kalinowski <tomasz@posit.co>",
      "Repository": "RSPM"
    },
    "rlang": {
      "Package": "rlang",
      "Version": "1.1.5",
      "Source": "Repository",
      "Title": "Functions for Base Types and Core R and 'Tidyverse' Features",
      "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.",
      "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\",  role = \"cph\",  comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\",  comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "License": "MIT + file LICENSE",
      "ByteCompile": "true",
      "Biarch": "true",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "cli (>= 3.1.0)",
        "covr",
        "crayon",
        "fs",
        "glue",
        "knitr",
        "magrittr",
        "methods",
        "pillar",
        "rmarkdown",
        "stats",
        "testthat (>= 3.0.0)",
        "tibble",
        "usethis",
        "vctrs (>= 0.2.3)",
        "withr"
      ],
      "Enhances": [
        "winch"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang",
      "BugReports": "https://github.com/r-lib/rlang/issues",
      "Config/testthat/edition": "3",
      "Config/Needs/website": "dplyr, tidyverse/tidytemplate",
      "NeedsCompilation": "yes",
      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], mikefc [cph] (Hash implementation based on Mike's xxhashlite), Yann Collet [cph] (Author of the embedded xxHash library), Posit, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "RSPM"
    },
    "rmarkdown": {
      "Package": "rmarkdown",
      "Version": "2.29",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Dynamic Documents for R",
      "Authors@R": "c( person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Yihui\", \"Xie\", , \"xie@yihui.name\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Jonathan\", \"McPherson\", , \"jonathan@posit.co\", role = \"aut\"), person(\"Javier\", \"Luraschi\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevin@posit.co\", role = \"aut\"), person(\"Aron\", \"Atkins\", , \"aron@posit.co\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Andrew\", \"Dunning\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0464-5036\")), person(\"Atsushi\", \"Yasumoto\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-8335-495X\", cph = \"Number sections Lua filter\")), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Carson\", \"Sievert\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4958-2844\")),  person(\"Devon\", \"Ryan\", , \"dpryan79@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Jeff\", \"Allen\", , \"jeff@posit.co\", role = \"ctb\"),  person(\"JooYoung\", \"Seo\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Malcolm\", \"Barrett\", role = \"ctb\"), person(\"Rob\", \"Hyndman\", , \"Rob.Hyndman@monash.edu\", role = \"ctb\"), person(\"Romain\", \"Lesur\", role = \"ctb\"), person(\"Roy\", \"Storey\", role = \"ctb\"), person(\"Ruben\", \"Arslan\", , \"ruben.arslan@uni-goettingen.de\", role = \"ctb\"), person(\"Sergio\", \"Oller\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Alexander\", \"Farkas\", role = c(\"ctb\", \"cph\"), comment = \"html5shiv library\"), person(\"Scott\", \"Jehl\", role = c(\"ctb\", \"cph\"), comment = \"Respond.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(\"Greg\", \"Franko\", role = c(\"ctb\", \"cph\"), comment = \"tocify library\"), person(\"John\", \"MacFarlane\", role = c(\"ctb\", \"cph\"), comment = \"Pandoc templates\"), person(, \"Google, Inc.\", role = c(\"ctb\", \"cph\"), comment = \"ioslides library\"), person(\"Dave\", \"Raggett\", role = \"ctb\", comment = \"slidy library\"), person(, \"W3C\", role = \"cph\", comment = \"slidy library\"), person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"), comment = \"Font-Awesome\"), person(\"Ben\", \"Sperry\", role = \"ctb\", comment = \"Ionicons\"), person(, \"Drifty\", role = \"cph\", comment = \"Ionicons\"), person(\"Aidan\", \"Lister\", role = c(\"ctb\", \"cph\"), comment = \"jQuery StickyTabs\"), person(\"Benct Philip\", \"Jonsson\", role = c(\"ctb\", \"cph\"), comment = \"pagebreak Lua filter\"), person(\"Albert\", \"Krewinkel\", role = c(\"ctb\", \"cph\"), comment = \"pagebreak Lua filter\") )",
      "Description": "Convert R Markdown documents into a variety of formats.",
      "License": "GPL-3",
      "URL": "https://github.com/rstudio/rmarkdown, https://pkgs.rstudio.com/rmarkdown/",
      "BugReports": "https://github.com/rstudio/rmarkdown/issues",
      "Depends": [
        "R (>= 3.0)"
      ],
      "Imports": [
        "bslib (>= 0.2.5.1)",
        "evaluate (>= 0.13)",
        "fontawesome (>= 0.5.0)",
        "htmltools (>= 0.5.1)",
        "jquerylib",
        "jsonlite",
        "knitr (>= 1.43)",
        "methods",
        "tinytex (>= 0.31)",
        "tools",
        "utils",
        "xfun (>= 0.36)",
        "yaml (>= 2.1.19)"
      ],
      "Suggests": [
        "digest",
        "dygraphs",
        "fs",
        "rsconnect",
        "downlit (>= 0.4.0)",
        "katex (>= 1.4.0)",
        "sass (>= 0.4.0)",
        "shiny (>= 1.6.0)",
        "testthat (>= 3.0.3)",
        "tibble",
        "vctrs",
        "cleanrmd",
        "withr (>= 2.4.2)",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "rstudio/quillt, pkgdown",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org",
      "NeedsCompilation": "no",
      "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>), Atsushi Yasumoto [ctb, cph] (<https://orcid.org/0000-0002-8335-495X>, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (<https://orcid.org/0000-0002-4958-2844>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>), Jeff Allen [ctb], JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "RSPM"
    },
    "roxygen2": {
      "Package": "roxygen2",
      "Version": "7.3.2",
      "Source": "Repository",
      "Title": "In-Line Documentation for R",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Peter\", \"Danenberg\", , \"pcd@roxygen.org\", role = c(\"aut\", \"cph\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\"), person(\"Manuel\", \"Eugster\", role = c(\"aut\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'roxygen2' is inspired by the 'Doxygen' system for C++.",
      "License": "MIT + file LICENSE",
      "URL": "https://roxygen2.r-lib.org/, https://github.com/r-lib/roxygen2",
      "BugReports": "https://github.com/r-lib/roxygen2/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "brew",
        "cli (>= 3.3.0)",
        "commonmark",
        "desc (>= 1.2.0)",
        "knitr",
        "methods",
        "pkgload (>= 1.0.2)",
        "purrr (>= 1.0.0)",
        "R6 (>= 2.1.2)",
        "rlang (>= 1.0.6)",
        "stringi",
        "stringr (>= 1.0.0)",
        "utils",
        "withr",
        "xml2"
      ],
      "Suggests": [
        "covr",
        "R.methodsS3",
        "R.oo",
        "rmarkdown (>= 2.16)",
        "testthat (>= 3.1.2)",
        "yaml"
      ],
      "LinkingTo": [
        "cpp11"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/development": "testthat",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Encoding": "UTF-8",
      "Language": "en-GB",
      "RoxygenNote": "7.3.1.9000",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre, cph] (<https://orcid.org/0000-0003-4757-117X>), Peter Danenberg [aut, cph], Gábor Csárdi [aut], Manuel Eugster [aut, cph], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "rprojroot": {
      "Package": "rprojroot",
      "Version": "2.0.4",
      "Source": "Repository",
      "Title": "Finding Files in Project Subdirectories",
      "Authors@R": "person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\"))",
      "Description": "Robust, reliable and flexible paths to files below a project root. The 'root' of a project is defined as a directory that matches a certain criterion, e.g., it contains a certain regular file.",
      "License": "MIT + file LICENSE",
      "URL": "https://rprojroot.r-lib.org/, https://github.com/r-lib/rprojroot",
      "BugReports": "https://github.com/r-lib/rprojroot/issues",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "lifecycle",
        "mockr",
        "rlang",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>)",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "rsconnect": {
      "Package": "rsconnect",
      "Version": "1.3.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs'",
      "Authors@R": "c( person(\"Aron\", \"Atkins\", , \"aron@posit.co\", role = c(\"aut\", \"cre\")), person(\"Toph\", \"Allen\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Programmatic deployment interface for 'RPubs', 'shinyapps.io', and 'Posit Connect'. Supported content types include R Markdown documents, Shiny applications, Plumber APIs, plots, and static web content.",
      "License": "GPL-2",
      "URL": "https://rstudio.github.io/rsconnect/, https://github.com/rstudio/rsconnect",
      "BugReports": "https://github.com/rstudio/rsconnect/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "cli",
        "curl",
        "digest",
        "jsonlite",
        "lifecycle",
        "openssl (>= 2.0.0)",
        "PKI",
        "packrat (>= 0.6)",
        "renv (>= 1.0.0)",
        "rlang (>= 1.0.0)",
        "rstudioapi (>= 0.5)",
        "tools",
        "yaml (>= 2.1.5)"
      ],
      "Suggests": [
        "Biobase",
        "BiocManager",
        "foreign",
        "knitr",
        "MASS",
        "plumber (>= 0.3.2)",
        "quarto",
        "RCurl",
        "reticulate",
        "rmarkdown (>= 1.1)",
        "shiny",
        "testthat (>= 3.1.9)",
        "webfakes",
        "withr"
      ],
      "VignetteBuilder": "knitr, rmarkdown",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Aron Atkins [aut, cre], Toph Allen [aut], Hadley Wickham [aut], Jonathan McPherson [aut], JJ Allaire [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Aron Atkins <aron@posit.co>",
      "Repository": "RSPM"
    },
    "rstatix": {
      "Package": "rstatix",
      "Version": "0.7.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Pipe-Friendly Framework for Basic Statistical Tests",
      "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"))",
      "Description": "Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,  for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.  The output of each test is automatically transformed into a tidy data frame to facilitate visualization.  Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.   Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs  (repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.  It's also possible to compute several effect size metrics, including \"eta squared\" for ANOVA, \"Cohen's d\" for t-test and  'Cramer V' for the association between categorical variables.  The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.",
      "License": "GPL-2",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "stats",
        "utils",
        "tidyr (>= 1.0.0)",
        "purrr",
        "broom (>= 0.7.4)",
        "rlang (>= 0.3.1)",
        "tibble (>= 2.1.3)",
        "dplyr (>= 0.7.1)",
        "magrittr",
        "corrplot",
        "tidyselect (>= 1.2.0)",
        "car",
        "generics (>= 0.0.2)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown",
        "ggpubr",
        "graphics",
        "emmeans",
        "coin",
        "boot",
        "testthat",
        "spelling"
      ],
      "URL": "https://rpkgs.datanovia.com/rstatix/",
      "BugReports": "https://github.com/kassambara/rstatix/issues",
      "RoxygenNote": "7.2.3",
      "Collate": "'utilities.R' 'add_significance.R' 'adjust_pvalue.R' 'factorial_design.R' 'utilities_two_sample_test.R' 'anova_summary.R' 'anova_test.R' 'as_cor_mat.R' 'binom_test.R' 'box_m.R' 'chisq_test.R' 'cochran_qtest.R' 'cohens_d.R' 'cor_as_symbols.R' 'replace_triangle.R' 'pull_triangle.R' 'cor_mark_significant.R' 'cor_mat.R' 'cor_plot.R' 'cor_reorder.R' 'cor_reshape.R' 'cor_select.R' 'cor_test.R' 'counts_to_cases.R' 'cramer_v.R' 'df.R' 'doo.R' 't_test.R' 'dunn_test.R' 'emmeans_test.R' 'eta_squared.R' 'factors.R' 'fisher_test.R' 'freq_table.R' 'friedman_test.R' 'friedman_effsize.R' 'games_howell_test.R' 'get_comparisons.R' 'get_manova_table.R' 'get_mode.R' 'get_pvalue_position.R' 'get_summary_stats.R' 'get_test_label.R' 'kruskal_effesize.R' 'kruskal_test.R' 'levene_test.R' 'mahalanobis_distance.R' 'make_clean_names.R' 'mcnemar_test.R' 'multinom_test.R' 'outliers.R' 'p_value.R' 'prop_test.R' 'prop_trend_test.R' 'reexports.R' 'remove_ns.R' 'sample_n_by.R' 'shapiro_test.R' 'sign_test.R' 'tukey_hsd.R' 'utils-manova.R' 'utils-pipe.R' 'welch_anova_test.R' 'wilcox_effsize.R' 'wilcox_test.R'",
      "Language": "en-US",
      "NeedsCompilation": "no",
      "Author": "Alboukadel Kassambara [aut, cre]",
      "Maintainer": "Alboukadel Kassambara <alboukadel.kassambara@gmail.com>",
      "Repository": "CRAN"
    },
    "rstudioapi": {
      "Package": "rstudioapi",
      "Version": "0.17.1",
      "Source": "Repository",
      "Title": "Safely Access the RStudio API",
      "Description": "Access the RStudio API (if available) and provide informative error messages when it's not.",
      "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\"), person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@posit.co\"), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@posit.co\"), person(\"Gary\", \"Ritchie\", role = c(\"aut\"), email = \"gary@posit.co\"), person(family = \"RStudio\", role = \"cph\") )",
      "Maintainer": "Kevin Ushey <kevin@rstudio.com>",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/rstudioapi/, https://github.com/rstudio/rstudioapi",
      "BugReports": "https://github.com/rstudio/rstudioapi/issues",
      "RoxygenNote": "7.3.2",
      "Suggests": [
        "testthat",
        "knitr",
        "rmarkdown",
        "clipr",
        "covr"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Kevin Ushey [aut, cre], JJ Allaire [aut], Hadley Wickham [aut], Gary Ritchie [aut], RStudio [cph]",
      "Repository": "CRAN"
    },
    "rversions": {
      "Package": "rversions",
      "Version": "2.1.2",
      "Source": "Repository",
      "Title": "Query 'R' Versions, Including 'r-release' and 'r-oldrel'",
      "Authors@R": "c(person(given = \"Gábor\", family = \"Csárdi\", role = c(\"aut\", \"cre\"), email = \"csardi.gabor@gmail.com\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", email = \"jeroen.ooms@stat.ucla.edu\"), person(given = \"R Consortium\", role = \"fnd\"))",
      "Description": "Query the main 'R' 'SVN' repository to find the versions 'r-release' and 'r-oldrel' refer to, and also all previous 'R' versions and their release dates.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-hub/rversions, https://r-hub.github.io/rversions/",
      "BugReports": "https://github.com/r-hub/rversions/issues",
      "Imports": [
        "curl",
        "utils",
        "xml2 (>= 1.0.0)"
      ],
      "Suggests": [
        "covr",
        "mockery",
        "testthat"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.1.9000",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Jeroen Ooms [ctb], R Consortium [fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "rvest": {
      "Package": "rvest",
      "Version": "1.0.4",
      "Source": "Repository",
      "Title": "Easily Harvest (Scrape) Web Pages",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Wrappers around the 'xml2' and 'httr' packages to make it easy to download, then manipulate, HTML and XML.",
      "License": "MIT + file LICENSE",
      "URL": "https://rvest.tidyverse.org/, https://github.com/tidyverse/rvest",
      "BugReports": "https://github.com/tidyverse/rvest/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli",
        "glue",
        "httr (>= 0.5)",
        "lifecycle (>= 1.0.3)",
        "magrittr",
        "rlang (>= 1.1.0)",
        "selectr",
        "tibble",
        "xml2 (>= 1.3)"
      ],
      "Suggests": [
        "chromote",
        "covr",
        "knitr",
        "R6",
        "readr",
        "repurrrsive",
        "rmarkdown",
        "spelling",
        "stringi (>= 0.3.1)",
        "testthat (>= 3.0.2)",
        "webfakes"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "sass": {
      "Package": "sass",
      "Version": "0.4.9",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Syntactically Awesome Style Sheets ('Sass')",
      "Description": "An 'SCSS' compiler, powered by the 'LibSass' library. With this, R developers can use variables, inheritance, and functions to generate dynamic style sheets. The package uses the 'Sass CSS' extension language, which is stable, powerful, and CSS compatible.",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@rstudio.com\", \"aut\"), person(\"Timothy\", \"Mastny\", , \"tim.mastny@gmail.com\", \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Barret\", \"Schloerke\", , \"barret@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Carson\", \"Sievert\", , \"carson@rstudio.com\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Christophe\", \"Dervieux\", , \"cderv@rstudio.com\", c(\"ctb\"), comment = c(ORCID = \"0000-0003-4474-2498\")), person(family = \"RStudio\", role = c(\"cph\", \"fnd\")), person(family = \"Sass Open Source Foundation\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Greter\", \"Marcel\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Mifsud\", \"Michael\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Hampton\", \"Catlin\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Natalie\", \"Weizenbaum\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Chris\", \"Eppstein\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Adams\", \"Joseph\", role = c(\"ctb\", \"cph\"), comment = \"json.cpp\"), person(\"Trifunovic\", \"Nemanja\", role = c(\"ctb\", \"cph\"), comment = \"utf8.h\") )",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/sass/, https://github.com/rstudio/sass",
      "BugReports": "https://github.com/rstudio/sass/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "SystemRequirements": "GNU make",
      "Imports": [
        "fs (>= 1.2.4)",
        "rlang (>= 0.4.10)",
        "htmltools (>= 0.5.1)",
        "R6",
        "rappdirs"
      ],
      "Suggests": [
        "testthat",
        "knitr",
        "rmarkdown",
        "withr",
        "shiny",
        "curl"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)",
      "Maintainer": "Carson Sievert <carson@rstudio.com>",
      "Repository": "CRAN"
    },
    "scales": {
      "Package": "scales",
      "Version": "1.3.0",
      "Source": "Repository",
      "Title": "Scale Functions for Visualization",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.",
      "License": "MIT + file LICENSE",
      "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
      "BugReports": "https://github.com/r-lib/scales/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli",
        "farver (>= 2.0.3)",
        "glue",
        "labeling",
        "lifecycle",
        "munsell (>= 0.5)",
        "R6",
        "RColorBrewer",
        "rlang (>= 1.0.0)",
        "viridisLite"
      ],
      "Suggests": [
        "bit64",
        "covr",
        "dichromat",
        "ggplot2",
        "hms (>= 0.5.0)",
        "stringi",
        "testthat (>= 3.0.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyLoad": "yes",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "scatterpie": {
      "Package": "scatterpie",
      "Version": "0.2.4",
      "Source": "Repository",
      "Title": "Scatter Pie Plot",
      "Authors@R": "c( person(given = \"Guangchuang\", family = \"Yu\",  email = \"guangchuangyu@gmail.com\", role  = c(\"aut\", \"cre\"),  comment = c(ORCID = \"0000-0002-6485-8781\")), person(given = \"Shuangbin\",   family = \"Xu\",        email = \"xshuangbin@163.com\",      role = \"ctb\",  comment = c(ORCID=\"0000-0003-3513-5362\")) )",
      "Description": "Creates scatterpie plots, especially useful for plotting pies on a map.",
      "Depends": [
        "R (>= 4.1.0)",
        "ggplot2"
      ],
      "Imports": [
        "ggforce",
        "rlang",
        "ggfun",
        "stats",
        "tidyr",
        "dplyr",
        "utils",
        "yulab.utils (>= 0.1.6)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown",
        "prettydoc",
        "maps",
        "scales",
        "cli"
      ],
      "VignetteBuilder": "knitr",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Shuangbin Xu [ctb] (<https://orcid.org/0000-0003-3513-5362>)",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Repository": "CRAN"
    },
    "selectr": {
      "Package": "selectr",
      "Version": "0.4-2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Translate CSS Selectors to XPath Expressions",
      "Date": "2019-11-20",
      "Authors@R": "c(person(\"Simon\", \"Potter\", role = c(\"aut\", \"trl\", \"cre\"), email = \"simon@sjp.co.nz\"), person(\"Simon\", \"Sapin\", role = \"aut\"), person(\"Ian\", \"Bicking\", role = \"aut\"))",
      "License": "BSD_3_clause + file LICENCE",
      "Depends": [
        "R (>= 3.0)"
      ],
      "Imports": [
        "methods",
        "stringr",
        "R6"
      ],
      "Suggests": [
        "testthat",
        "XML",
        "xml2"
      ],
      "URL": "https://sjp.co.nz/projects/selectr",
      "BugReports": "https://github.com/sjp/selectr/issues",
      "Description": "Translates a CSS3 selector into an equivalent XPath expression. This allows us to use CSS selectors when working with the XML package as it can only evaluate XPath expressions. Also provided are convenience functions useful for using CSS selectors on XML nodes. This package is a port of the Python package 'cssselect' (<https://cssselect.readthedocs.io/>).",
      "NeedsCompilation": "no",
      "Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]",
      "Maintainer": "Simon Potter <simon@sjp.co.nz>",
      "Repository": "CRAN"
    },
    "sessioninfo": {
      "Package": "sessioninfo",
      "Version": "1.2.3",
      "Source": "Repository",
      "Title": "R Session Information",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Robert\", \"Flight\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"R Core team\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Query and print information about the current R session.  It is similar to 'utils::sessionInfo()', but includes more information about packages, and where they were installed from.",
      "License": "GPL-2",
      "URL": "https://github.com/r-lib/sessioninfo#readme, https://sessioninfo.r-lib.org",
      "BugReports": "https://github.com/r-lib/sessioninfo/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "cli (>= 3.1.0)",
        "tools",
        "utils"
      ],
      "Suggests": [
        "callr",
        "covr",
        "gh",
        "reticulate",
        "rmarkdown",
        "testthat (>= 3.2.0)",
        "withr"
      ],
      "Config/Needs/website": "pkgdown, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [cre], Hadley Wickham [aut], Winston Chang [aut], Robert Flight [aut], Kirill Müller [aut], Jim Hester [aut], R Core team [ctb], Posit Software, PBC [cph, fnd]",
      "Repository": "RSPM"
    },
    "shadowtext": {
      "Package": "shadowtext",
      "Version": "0.1.4",
      "Source": "Repository",
      "Title": "Shadow Text Grob and Layer",
      "Authors@R": "person(\"Guangchuang\", \"Yu\", email = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\"))",
      "Description": "Implement shadowtextGrob() for 'grid' and geom_shadowtext() layer for 'ggplot2'. These functions create/draw text grob with background shadow.",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
        "ggplot2",
        "grid",
        "scales"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown",
        "prettydoc"
      ],
      "VignetteBuilder": "knitr",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "URL": "https://github.com/GuangchuangYu/shadowtext/",
      "BugReports": "https://github.com/GuangchuangYu/shadowtext/issues",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre]",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Repository": "CRAN"
    },
    "shiny": {
      "Package": "shiny",
      "Version": "1.10.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Web Application Framework for R",
      "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"JJ\", \"Allaire\", role = \"aut\", email = \"jj@posit.co\"), person(\"Carson\", \"Sievert\", role = \"aut\", email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@posit.co\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\", email = \"jonathan@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(family = \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(family = \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(family = \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"John\", \"Fraser\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"John\", \"Gruber\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(family = \"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )",
      "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.",
      "License": "GPL-3 | file LICENSE",
      "Depends": [
        "R (>= 3.0.2)",
        "methods"
      ],
      "Imports": [
        "utils",
        "grDevices",
        "httpuv (>= 1.5.2)",
        "mime (>= 0.3)",
        "jsonlite (>= 0.9.16)",
        "xtable",
        "fontawesome (>= 0.4.0)",
        "htmltools (>= 0.5.4)",
        "R6 (>= 2.0)",
        "sourcetools",
        "later (>= 1.0.0)",
        "promises (>= 1.3.2)",
        "tools",
        "crayon",
        "rlang (>= 0.4.10)",
        "fastmap (>= 1.1.1)",
        "withr",
        "commonmark (>= 1.7)",
        "glue (>= 1.3.2)",
        "bslib (>= 0.6.0)",
        "cachem (>= 1.1.0)",
        "lifecycle (>= 0.2.0)"
      ],
      "Suggests": [
        "coro (>= 1.1.0)",
        "datasets",
        "DT",
        "Cairo (>= 1.5-5)",
        "testthat (>= 3.0.0)",
        "knitr (>= 1.6)",
        "markdown",
        "rmarkdown",
        "ggplot2",
        "reactlog (>= 1.0.0)",
        "magrittr",
        "yaml",
        "future",
        "dygraphs",
        "ragg",
        "showtext",
        "sass"
      ],
      "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny",
      "BugReports": "https://github.com/rstudio/shiny/issues",
      "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R' 'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R' 'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R' 'map.R' 'utils.R' 'bootstrap.R' 'busy-indicators-spinners.R' 'busy-indicators.R' 'cache-utils.R' 'deprecated.R' 'devmode.R' 'diagnose.R' 'extended-task.R' 'fileupload.R' 'graph.R' 'reactives.R' 'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R' 'image-interact-opts.R' 'image-interact.R' 'imageutils.R' 'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R' 'input-date.R' 'input-daterange.R' 'input-file.R' 'input-numeric.R' 'input-password.R' 'input-radiobuttons.R' 'input-select.R' 'input-slider.R' 'input-submit.R' 'input-text.R' 'input-textarea.R' 'input-utils.R' 'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R' 'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R' 'mock-session.R' 'modal.R' 'modules.R' 'notifications.R' 'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R' 'render-cached-plot.R' 'render-plot.R' 'render-table.R' 'run-url.R' 'runapp.R' 'serializers.R' 'server-input-handlers.R' 'server-resource-paths.R' 'server.R' 'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R' 'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R' 'tar.R' 'test-export.R' 'test-server.R' 'test.R' 'update-input.R' 'utils-lang.R' 'version_bs_date_picker.R' 'version_ion_range_slider.R' 'version_jquery.R' 'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R' 'viewer.R'",
      "RoxygenNote": "7.3.2",
      "Encoding": "UTF-8",
      "RdMacros": "lifecycle",
      "Config/testthat/edition": "3",
      "Config/Needs/check": "shinytest2",
      "NeedsCompilation": "no",
      "Author": "Winston Chang [aut, cre] (<https://orcid.org/0000-0002-1576-2126>), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut] (<https://orcid.org/0000-0002-4958-2844>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "RSPM"
    },
    "shinyjs": {
      "Package": "shinyjs",
      "Version": "2.1.0",
      "Source": "Repository",
      "Title": "Easily Improve the User Experience of Your Shiny Apps in Seconds",
      "Authors@R": "person(\"Dean\", \"Attali\",  email = \"daattali@gmail.com\", role = c(\"aut\", \"cre\"), comment= c(ORCID=\"0000-0002-5645-3493\"))",
      "Description": "Perform common useful JavaScript operations in Shiny apps that will greatly improve your apps without having to know any JavaScript. Examples include: hiding an element, disabling an input, resetting an input back to its original value, delaying code execution by a few seconds, and many more useful functions for both the end user and the developer. 'shinyjs' can also be used to easily call your own custom JavaScript functions from R.",
      "URL": "https://deanattali.com/shinyjs/",
      "BugReports": "https://github.com/daattali/shinyjs/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "digest (>= 0.6.8)",
        "jsonlite",
        "shiny (>= 1.0.0)"
      ],
      "Suggests": [
        "htmltools (>= 0.2.9)",
        "knitr (>= 1.7)",
        "rmarkdown",
        "shinyAce",
        "shinydisconnect",
        "testthat (>= 0.9.1)"
      ],
      "License": "MIT + file LICENSE",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Dean Attali [aut, cre] (<https://orcid.org/0000-0002-5645-3493>)",
      "Maintainer": "Dean Attali <daattali@gmail.com>",
      "Repository": "CRAN"
    },
    "snow": {
      "Package": "snow",
      "Version": "0.4-4",
      "Source": "Repository",
      "Title": "Simple Network of Workstations",
      "Author": "Luke Tierney, A. J. Rossini, Na Li, H. Sevcikova",
      "Description": "Support for simple parallel computing in R.",
      "Maintainer": "Luke Tierney <luke-tierney@uiowa.edu>",
      "Suggests": [
        "rlecuyer"
      ],
      "Enhances": [
        "Rmpi"
      ],
      "License": "GPL",
      "Depends": [
        "R (>= 2.13.1)",
        "utils"
      ],
      "NeedsCompilation": "no",
      "Repository": "CRAN",
      "Encoding": "UTF-8"
    },
    "sourcetools": {
      "Package": "sourcetools",
      "Version": "0.1.7-1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Tools for Reading, Tokenizing and Parsing R Code",
      "Author": "Kevin Ushey",
      "Maintainer": "Kevin Ushey <kevinushey@gmail.com>",
      "Description": "Tools for the reading and tokenization of R code. The 'sourcetools' package provides both an R and C++ interface for the tokenization of R code, and helpers for interacting with the tokenized representation of R code.",
      "License": "MIT + file LICENSE",
      "Depends": [
        "R (>= 3.0.2)"
      ],
      "Suggests": [
        "testthat"
      ],
      "RoxygenNote": "5.0.1",
      "BugReports": "https://github.com/kevinushey/sourcetools/issues",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "stringi": {
      "Package": "stringi",
      "Version": "1.8.4",
      "Source": "Repository",
      "Date": "2024-05-06",
      "Title": "Fast and Portable Character String Processing Facilities",
      "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at <https://stringi.gagolewski.com/> and the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).",
      "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/",
      "BugReports": "https://github.com/gagolews/stringi/issues",
      "SystemRequirements": "ICU4C (>= 61, optional)",
      "Type": "Package",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "tools",
        "utils",
        "stats"
      ],
      "Biarch": "TRUE",
      "License": "file LICENSE",
      "Author": "Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>), Bartek Tartanus [ctb], and others (stringi source code); Unicode, Inc. and others (ICU4C source code, Unicode Character Database)",
      "Maintainer": "Marek Gagolewski <marek@gagolewski.com>",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "License_is_FOSS": "yes",
      "Repository": "CRAN"
    },
    "stringr": {
      "Package": "stringr",
      "Version": "1.5.1",
      "Source": "Repository",
      "Title": "Simple, Consistent Wrappers for Common String Operations",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with \"NA\"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.",
      "License": "MIT + file LICENSE",
      "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr",
      "BugReports": "https://github.com/tidyverse/stringr/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli",
        "glue (>= 1.6.1)",
        "lifecycle (>= 1.0.3)",
        "magrittr",
        "rlang (>= 1.0.0)",
        "stringi (>= 1.5.3)",
        "vctrs (>= 0.4.0)"
      ],
      "Suggests": [
        "covr",
        "dplyr",
        "gt",
        "htmltools",
        "htmlwidgets",
        "knitr",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "tibble"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "survival": {
      "Package": "survival",
      "Version": "3.8-3",
      "Source": "Repository",
      "Title": "Survival Analysis",
      "Priority": "recommended",
      "Date": "2024-12-17",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "graphics",
        "Matrix",
        "methods",
        "splines",
        "stats",
        "utils"
      ],
      "LazyData": "Yes",
      "LazyDataCompression": "xz",
      "ByteCompile": "Yes",
      "Authors@R": "c(person(c(\"Terry\", \"M\"), \"Therneau\", email=\"therneau.terry@mayo.edu\", role=c(\"aut\", \"cre\")), person(\"Thomas\", \"Lumley\", role=c(\"ctb\", \"trl\"), comment=\"original S->R port and R maintainer until 2009\"), person(\"Atkinson\", \"Elizabeth\", role=\"ctb\"), person(\"Crowson\", \"Cynthia\", role=\"ctb\"))",
      "Description": "Contains the core survival analysis routines, including definition of Surv objects,  Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.",
      "License": "LGPL (>= 2)",
      "URL": "https://github.com/therneau/survival",
      "NeedsCompilation": "yes",
      "Author": "Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009), Atkinson Elizabeth [ctb], Crowson Cynthia [ctb]",
      "Maintainer": "Terry M Therneau <therneau.terry@mayo.edu>",
      "Repository": "RSPM",
      "Encoding": "UTF-8"
    },
    "sys": {
      "Package": "sys",
      "Version": "3.4.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Powerful and Reliable Tools for Running System Commands in R",
      "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"),  email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))",
      "Description": "Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout,  background tasks, and streaming STDIN / STDOUT / STDERR over binary or text  connections. Arguments on Windows automatically get encoded and quoted to work  on different locales.",
      "License": "MIT + file LICENSE",
      "URL": "https://jeroen.r-universe.dev/sys",
      "BugReports": "https://github.com/jeroen/sys/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "Suggests": [
        "unix (>= 1.4)",
        "spelling",
        "testthat"
      ],
      "Language": "en-US",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Gábor Csárdi [ctb]",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "RSPM"
    },
    "systemfonts": {
      "Package": "systemfonts",
      "Version": "1.2.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "System Native Font Finding",
      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Devon\", \"Govett\", role = \"aut\", comment = \"Author of font-manager\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts' package provides bindings to the native libraries on Windows, macOS and Linux for finding font files that can then be used further by e.g. graphic devices. The main use is intended to be from compiled code but 'systemfonts' also provides access from R.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/systemfonts, https://systemfonts.r-lib.org",
      "BugReports": "https://github.com/r-lib/systemfonts/issues",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Suggests": [
        "covr",
        "farver",
        "graphics",
        "knitr",
        "rmarkdown",
        "testthat (>= 2.1.0)"
      ],
      "LinkingTo": [
        "cpp11 (>= 0.2.1)"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "fontconfig, freetype2",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Imports": [
        "grid",
        "jsonlite",
        "lifecycle",
        "tools",
        "utils"
      ],
      "Config/build/compilation-database": "true",
      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [aut, cre] (<https://orcid.org/0000-0002-5147-4711>), Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>), Devon Govett [aut] (Author of font-manager), Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "RSPM"
    },
    "testthat": {
      "Package": "testthat",
      "Version": "3.2.3",
      "Source": "Repository",
      "Title": "Unit Testing for R",
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      "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants",
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      "Description": "A graph, while not \"tidy\" in itself, can be thought of as two tidy data frames describing node and edge data respectively. 'tidygraph' provides an approach to manipulate these two virtual data frames using the API defined in the 'dplyr' package, as well as provides tidy interfaces to a lot of common graph algorithms.",
      "License": "MIT + file LICENSE",
      "URL": "https://tidygraph.data-imaginist.com, https://github.com/thomasp85/tidygraph",
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      "License": "MIT + file LICENSE",
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        "rlang (>= 1.1.1)",
        "stringr (>= 1.5.0)",
        "tibble (>= 2.1.1)",
        "tidyselect (>= 1.2.0)",
        "utils",
        "vctrs (>= 0.5.2)"
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        "data.table",
        "knitr",
        "readr",
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
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      "Author": "Hadley Wickham [aut, cre], Davis Vaughan [aut], Maximilian Girlich [aut], Kevin Ushey [ctb], Posit Software, PBC [cph, fnd]",
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      "Version": "1.2.1",
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      "License": "MIT + file LICENSE",
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      "BugReports": "https://github.com/r-lib/tidyselect/issues",
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        "vctrs (>= 0.5.2)",
        "withr"
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      "ByteCompile": "true",
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      "Version": "0.4.6",
      "Source": "Repository",
      "Title": "A Tidy Tool for Phylogenetic Tree Data Manipulation",
      "Authors@R": "c( person(\"Guangchuang\", \"Yu\",   email = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-6485-8781\")), person(\"Bradley\", \"Jones\",    email = \"brj1@sfu.ca\",             role = \"ctb\"), person(\"Zebulun\", \"Arendsee\", email = \"zbwrnz@gmail.com\",        role = \"ctb\") )",
      "Description": "Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.",
      "Depends": [
        "R (>= 3.4.0)"
      ],
      "Imports": [
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        "lazyeval",
        "magrittr",
        "methods",
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        "tidyselect",
        "yulab.utils (>= 0.0.4)",
        "pillar",
        "cli"
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      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "License": "Artistic-2.0",
      "URL": "https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/",
      "BugReports": "https://github.com/YuLab-SMU/tidytree/issues",
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      "NeedsCompilation": "no",
      "Author": "Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Bradley Jones [ctb], Zebulun Arendsee [ctb]",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "Repository": "CRAN"
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      "Version": "2.0.0",
      "Source": "Repository",
      "Title": "Easily Install and Load the 'Tidyverse'",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. Learn more about the 'tidyverse' at <https://www.tidyverse.org>.",
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      "URL": "https://tidyverse.tidyverse.org, https://github.com/tidyverse/tidyverse",
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      "Version": "0.3.0",
      "Source": "Repository",
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      "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))",
      "Description": "Efficient routines for manipulation of date-time objects while accounting for time-zones and daylight saving times. The package includes utilities for updating of date-time components (year, month, day etc.), modification of time-zones, rounding of date-times, period addition and subtraction etc. Parts of the 'CCTZ' source code, released under the Apache 2.0 License, are included in this package. See <https://github.com/google/cctz> for more details.",
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      "BugReports": "https://github.com/vspinu/timechange/issues",
      "URL": "https://github.com/vspinu/timechange/",
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      "Author": "Vitalie Spinu [aut, cre], Google Inc. [ctb, cph]",
      "Maintainer": "Vitalie Spinu <spinuvit@gmail.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Type": "Package",
      "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Devon\", \"Ryan\", role = \"ctb\", email = \"dpryan79@gmail.com\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Ethan\", \"Heinzen\", role = \"ctb\"), person(\"Fernando\", \"Cagua\", role = \"ctb\"), person() )",
      "Description": "Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.",
      "Imports": [
        "xfun (>= 0.48)"
      ],
      "Suggests": [
        "testit",
        "rstudioapi"
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      "License": "MIT + file LICENSE",
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      "Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Ethan Heinzen [ctb], Fernando Cagua [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "RSPM"
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    "treeio": {
      "Package": "treeio",
      "Version": "1.31.0",
      "Source": "GitHub",
      "Title": "Base Classes and Functions for Phylogenetic Tree Input and Output",
      "Authors@R": "c( person(\"Guangchuang\", \"Yu\",     email = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6485-8781\")), person(\"Tommy Tsan-Yuk\", \"Lam\", email = \"tylam.tommy@gmail.com\",   role = c(\"ctb\", \"ths\")), person(\"Shuangbin\", \"Xu\",       email = \"xshuangbin@163.com\",      role = \"ctb\",           comment = c(ORCID=\"0000-0003-3513-5362\")), person(\"Bradley\", \"Jones\",      email = \"brj1@sfu.ca\",             role = \"ctb\"), person(\"Casey\", \"Dunn\",         email = \"casey_dunn@brown.edu\",    role = \"ctb\"), person(\"Tyler\", \"Bradley\",      email = \"tcb85@drexel.edu\",        role = \"ctb\"), person(\"Konstantinos\", \"Geles\", email = \"konstantinos.geles@studenti.unicz.it\", role = \"ctb\") )",
      "Description": "'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "ape",
        "dplyr",
        "jsonlite",
        "magrittr",
        "methods",
        "rlang",
        "stats",
        "tibble",
        "tidytree (>= 0.4.5)",
        "utils",
        "yulab.utils (>= 0.1.6)"
      ],
      "Suggests": [
        "Biostrings",
        "cli",
        "ggplot2",
        "ggtree",
        "igraph",
        "knitr",
        "rmarkdown",
        "phangorn",
        "prettydoc",
        "purrr",
        "testthat",
        "tidyr",
        "vroom",
        "xml2",
        "yaml"
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      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "URL": "https://yulab-smu.top/contribution-tree-data/",
      "BugReports": "https://github.com/YuLab-SMU/treeio/issues",
      "biocViews": "Software, Annotation, Clustering, DataImport, DataRepresentation, Alignment, MultipleSequenceAlignment, Phylogenetics",
      "RoxygenNote": "7.3.2",
      "Author": "Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [ctb, ths], Shuangbin Xu [ctb] (<https://orcid.org/0000-0003-3513-5362>), Bradley Jones [ctb], Casey Dunn [ctb], Tyler Bradley [ctb], Konstantinos Geles [ctb]",
      "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
      "RemoteType": "github",
      "RemoteHost": "api.github.com",
      "RemoteUsername": "GuangchuangYu",
      "RemoteRepo": "treeio",
      "RemoteRef": "devel",
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      "Version": "2.0.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Interpolate Data for Smooth Animations",
      "Authors@R": "c(person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"aut\", \"cre\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\")))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "In order to create smooth animation between states of data, tweening is necessary. This package provides a range of functions for creating tweened data that can be used as basis for animation. Furthermore  it adds a number of vectorized interpolaters for common R data  types such as numeric, date and colour.",
      "URL": "https://github.com/thomasp85/tweenr",
      "BugReports": "https://github.com/thomasp85/tweenr/issues",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Imports": [
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        "magrittr",
        "rlang",
        "vctrs"
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        "covr"
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      "Repository": "CRAN"
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      "Version": "0.5.0",
      "Source": "Repository",
      "Title": "Time Zone Database Information",
      "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Howard\", \"Hinnant\", role = \"cph\", comment = \"Author of the included date library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight saving time rules. Additionally, this package provides a C++ interface for working with the 'date' library. 'date' provides comprehensive support for working with dates and date-times, which this package exposes to make it easier for other R packages to utilize. Headers are provided for calendar specific calculations, along with a limited interface for time zone manipulations.",
      "License": "MIT + file LICENSE",
      "URL": "https://tzdb.r-lib.org, https://github.com/r-lib/tzdb",
      "BugReports": "https://github.com/r-lib/tzdb/issues",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Suggests": [
        "covr",
        "testthat (>= 3.0.0)"
      ],
      "LinkingTo": [
        "cpp11 (>= 0.5.2)"
      ],
      "Biarch": "yes",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Davis Vaughan [aut, cre], Howard Hinnant [cph] (Author of the included date library), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "RSPM"
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      "Version": "0.2.10.0",
      "Source": "Repository",
      "Title": "Uniform Manifold Approximation and Projection",
      "Authors@R": "person(\"Tomasz\", \"Konopka\", , \"tokonopka@gmail.com\", role = c(\"aut\", \"cre\"))",
      "Author": "Tomasz Konopka [aut, cre]",
      "Maintainer": "Tomasz Konopka <tokonopka@gmail.com>",
      "Description": "Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in <arXiv:1802.03426>. This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "Matrix",
        "methods",
        "openssl",
        "reticulate",
        "Rcpp (>= 0.12.6)",
        "RSpectra",
        "stats"
      ],
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/tkonopka/umap",
      "BugReports": "https://github.com/tkonopka/umap/issues",
      "LinkingTo": [
        "Rcpp"
      ],
      "Suggests": [
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        "rmarkdown",
        "testthat"
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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    "urlchecker": {
      "Package": "urlchecker",
      "Version": "1.0.1",
      "Source": "Repository",
      "Title": "Run CRAN URL Checks from Older R Versions",
      "Authors@R": "c( person(\"R Core team\", role = \"aut\", comment = \"The code in urltools.R adapted from the tools package\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provide the URL checking tools available in R 4.1+ as a package for earlier versions of R. Also uses concurrent requests so can be much faster than the serial versions.",
      "License": "GPL-3",
      "URL": "https://github.com/r-lib/urlchecker",
      "BugReports": "https://github.com/r-lib/urlchecker/issues",
      "Depends": [
        "R (>= 3.3)"
      ],
      "Imports": [
        "cli",
        "curl",
        "tools",
        "xml2"
      ],
      "Suggests": [
        "covr"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "no",
      "Author": "R Core team [aut] (The code in urltools.R adapted from the tools package), Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Gábor Csárdi [aut, cre], RStudio [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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      "Package": "usethis",
      "Version": "3.1.0",
      "Source": "Repository",
      "Title": "Automate Package and Project Setup",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Andy\", \"Teucher\", , \"andy.teucher@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7840-692X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.",
      "License": "MIT + file LICENSE",
      "URL": "https://usethis.r-lib.org, https://github.com/r-lib/usethis",
      "BugReports": "https://github.com/r-lib/usethis/issues",
      "Depends": [
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      "Imports": [
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        "fs (>= 1.3.0)",
        "gert (>= 1.4.1)",
        "gh (>= 1.2.1)",
        "glue (>= 1.3.0)",
        "jsonlite",
        "lifecycle (>= 1.0.0)",
        "purrr",
        "rappdirs",
        "rlang (>= 1.1.0)",
        "rprojroot (>= 1.2)",
        "rstudioapi",
        "stats",
        "tools",
        "utils",
        "whisker",
        "withr (>= 2.3.0)",
        "yaml"
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      "Suggests": [
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        "knitr",
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        "rmarkdown",
        "roxygen2 (>= 7.1.2)",
        "spelling (>= 1.2)",
        "styler (>= 1.2.0)",
        "testthat (>= 3.1.8)"
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      "Config/Needs/website": "r-lib/asciicast, tidyverse/tidytemplate, xml2",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Config/testthat/start-first": "github-actions, release",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Malcolm Barrett [aut] (<https://orcid.org/0000-0003-0299-5825>), Andy Teucher [aut] (<https://orcid.org/0000-0002-7840-692X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "RSPM"
    },
    "utf8": {
      "Package": "utf8",
      "Version": "1.2.4",
      "Source": "Repository",
      "Title": "Unicode Text Processing",
      "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\"), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))",
      "Description": "Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.",
      "License": "Apache License (== 2.0) | file LICENSE",
      "URL": "https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8",
      "BugReports": "https://github.com/patperry/r-utf8/issues",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Suggests": [
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        "covr",
        "knitr",
        "rlang",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "withr"
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      "VignetteBuilder": "knitr, rmarkdown",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre], Unicode, Inc. [cph, dtc] (Unicode Character Database)",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "uuid": {
      "Package": "uuid",
      "Version": "1.2-1",
      "Source": "Repository",
      "Title": "Tools for Generating and Handling of UUIDs",
      "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, <https://orcid.org/0000-0003-2297-1732>), Theodore Ts'o [aut, cph] (libuuid)",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Authors@R": "c(person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\")), person(\"Theodore\",\"Ts'o\", email=\"tytso@thunk.org\", role=c(\"aut\",\"cph\"), comment=\"libuuid\"))",
      "Depends": [
        "R (>= 2.9.0)"
      ],
      "Description": "Tools for generating and handling of UUIDs (Universally Unique Identifiers).",
      "License": "MIT + file LICENSE",
      "URL": "https://www.rforge.net/uuid",
      "BugReports": "https://github.com/s-u/uuid/issues",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Version": "0.6.5",
      "Source": "Repository",
      "Title": "Vector Helpers",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"data.table team\", role = \"cph\", comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Defines new notions of prototype and size that are used to provide tools for consistent and well-founded type-coercion and size-recycling, and are in turn connected to ideas of type- and size-stability useful for analysing function interfaces.",
      "License": "MIT + file LICENSE",
      "URL": "https://vctrs.r-lib.org/, https://github.com/r-lib/vctrs",
      "BugReports": "https://github.com/r-lib/vctrs/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "glue",
        "lifecycle (>= 1.0.3)",
        "rlang (>= 1.1.0)"
      ],
      "Suggests": [
        "bit64",
        "covr",
        "crayon",
        "dplyr (>= 0.8.5)",
        "generics",
        "knitr",
        "pillar (>= 1.4.4)",
        "pkgdown (>= 2.0.1)",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "tibble (>= 3.1.3)",
        "waldo (>= 0.2.0)",
        "withr",
        "xml2",
        "zeallot"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Language": "en-GB",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] (Radix sort based on data.table's forder() and their contribution to R's order()), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "CRAN"
    },
    "viridis": {
      "Package": "viridis",
      "Version": "0.6.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Colorblind-Friendly Color Maps for R",
      "Date": "2024-01-28",
      "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
      "Maintainer": "Simon Garnier <garnier@njit.edu>",
      "Description": "Color maps designed to improve graph readability for readers with  common forms of color blindness and/or color vision deficiency. The color  maps are also perceptually-uniform, both in regular form and also when  converted to black-and-white for printing. This package also contains  'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the  'ggplot2' bindings can be found at  <https://cran.r-project.org/package=viridisLite>.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 2.10)",
        "viridisLite (>= 0.4.0)"
      ],
      "Imports": [
        "ggplot2 (>= 1.0.1)",
        "gridExtra"
      ],
      "Suggests": [
        "hexbin (>= 1.27.0)",
        "scales",
        "MASS",
        "knitr",
        "dichromat",
        "colorspace",
        "httr",
        "mapproj",
        "vdiffr",
        "svglite (>= 1.2.0)",
        "testthat",
        "covr",
        "rmarkdown",
        "maps",
        "terra"
      ],
      "LazyData": "true",
      "VignetteBuilder": "knitr",
      "URL": "https://sjmgarnier.github.io/viridis/, https://github.com/sjmgarnier/viridis/",
      "BugReports": "https://github.com/sjmgarnier/viridis/issues",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]",
      "Repository": "CRAN"
    },
    "viridisLite": {
      "Package": "viridisLite",
      "Version": "0.4.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Colorblind-Friendly Color Maps (Lite Version)",
      "Date": "2023-05-02",
      "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
      "Maintainer": "Simon Garnier <garnier@njit.edu>",
      "Description": "Color maps designed to improve graph readability for readers with  common forms of color blindness and/or color vision deficiency. The color  maps are also perceptually-uniform, both in regular form and also when  converted to black-and-white for printing. This is the 'lite' version of the  'viridis' package that also contains 'ggplot2' bindings for discrete and  continuous color and fill scales and can be found at  <https://cran.r-project.org/package=viridis>.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Suggests": [
        "hexbin (>= 1.27.0)",
        "ggplot2 (>= 1.0.1)",
        "testthat",
        "covr"
      ],
      "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/",
      "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]",
      "Repository": "CRAN"
    },
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      "Package": "vroom",
      "Version": "1.6.5",
      "Source": "Repository",
      "Title": "Read and Write Rectangular Text Data Quickly",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read.  The writer formats the data in parallel and writes to disk asynchronously from formatting.",
      "License": "MIT + file LICENSE",
      "URL": "https://vroom.r-lib.org, https://github.com/tidyverse/vroom",
      "BugReports": "https://github.com/tidyverse/vroom/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
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        "cli (>= 3.2.0)",
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        "rlang (>= 0.4.2)",
        "stats",
        "tibble (>= 2.0.0)",
        "tidyselect",
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        "vctrs (>= 0.2.0)",
        "withr"
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        "bench (>= 1.1.0)",
        "covr",
        "curl",
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        "forcats",
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        "patchwork",
        "prettyunits",
        "purrr",
        "rmarkdown",
        "rstudioapi",
        "scales",
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "nycflights13, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
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      "Copyright": "file COPYRIGHTS",
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      "Language": "en-US",
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