Reverted relative paths. #66

Author: Hatim Chahout

tests/run_test_setup.bash

@@ -4,6 +4,8 @@
 # Exit immediately if a command exits with a non-zero status.
 set -ex
 
+echo "Current working directory: $(pwd)"
+
 # Mock slurm and mass commands for testing
 sbatch() { echo "MOCK SBATCH: $@"; }
 slurm_wait() { :; }

tests/run_tests.bash

@@ -11,31 +11,31 @@ echo "Running all integration tests..."
 echo ""
 echo "-------------------------------------"
 echo "Running test_valid_run.bash"
-./test_valid_run.bash
+./tests/test_valid_run.bash
 
 # Test 2: Test with missing dependencies
 echo ""
 echo "-------------------------------------"
 echo "Running test_missing_deps.bash"
-./test_missing_deps.bash
+./tests/test_missing_deps.bash
 
 # Test 3: Test with user choices for Southern Ocean
 echo ""
 echo "-------------------------------------"
 echo "Running test_user_choices.bash"
-./test_user_choices.bash
+./tests/test_user_choices.bash
 
 # Test 4: Test with missing arguments
 echo ""
 echo "-------------------------------------"
 echo "Running test_missing_args.bash"
-./test_missing_args.bash
+./tests/test_missing_args.bash
 
 # Test 5: Test with missing or invalid file paths
 echo ""
 echo "-------------------------------------"
 echo "Running test_invalid_paths.bash"
-./test_invalid_paths.bash
+./tests/test_invalid_paths.bash
 
 echo ""
 echo "-------------------------------------"