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1 | 1 | <!doctype html><html lang=en-us><head><meta charset=utf-8><meta name=viewport content="width=device-width,initial-scale=1"><meta http-equiv=x-ua-compatible content="IE=edge"><meta name=generator content="Source Themes Academic 4.7.0"><meta name=author content="Janani Ravi"><meta name=description content="Janani Ravi's Lab"><link rel=alternate hreflang=en-us href=/authors/evan-p-brenner/><meta name=theme-color content="hsl(339, 90%, 68%)"><link rel=stylesheet href=https://cdnjs.cloudflare.com/ajax/libs/academicons/1.8.6/css/academicons.min.css integrity="sha256-uFVgMKfistnJAfoCUQigIl+JfUaP47GrRKjf6CTPVmw=" crossorigin=anonymous><link rel=stylesheet href=https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.0-1/css/all.min.css integrity="sha256-4w9DunooKSr3MFXHXWyFER38WmPdm361bQS/2KUWZbU=" crossorigin=anonymous><link rel=stylesheet href=https://cdnjs.cloudflare.com/ajax/libs/fancybox/3.5.7/jquery.fancybox.min.css integrity="sha256-Vzbj7sDDS/woiFS3uNKo8eIuni59rjyNGtXfstRzStA=" crossorigin=anonymous><link rel=stylesheet href=https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.18.1/styles/github.min.css crossorigin=anonymous title=hl-light disabled><link rel=stylesheet href=https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.18.1/styles/dracula.min.css crossorigin=anonymous title=hl-dark><link rel=stylesheet href=https://cdnjs.cloudflare.com/ajax/libs/leaflet/1.5.1/leaflet.css integrity="sha256-SHMGCYmST46SoyGgo4YR/9AlK1vf3ff84Aq9yK4hdqM=" crossorigin=anonymous><script src=https://cdnjs.cloudflare.com/ajax/libs/lazysizes/5.1.2/lazysizes.min.js integrity="sha256-Md1qLToewPeKjfAHU1zyPwOutccPAm5tahnaw7Osw0A=" crossorigin=anonymous async></script> |
2 | 2 | <link rel=stylesheet href="https://fonts.googleapis.com/css?family=Montserrat:400,700%7CRoboto:400,400italic,700%7CRoboto+Mono&display=swap"><link rel=stylesheet href=/css/academic.css><link rel=alternate href=/authors/evan-p-brenner/index.xml type=application/rss+xml title=JRaviLab><link rel=manifest href=/index.webmanifest><link rel=icon type=image/png href=/images/icon_hu0b7a4cb9992c9ac0e91bd28ffd38dd00_9727_32x32_fill_lanczos_center_3.png><link rel=apple-touch-icon type=image/png href=/images/icon_hu0b7a4cb9992c9ac0e91bd28ffd38dd00_9727_192x192_fill_lanczos_center_3.png><link rel=canonical href=/authors/evan-p-brenner/><meta property="twitter:card" content="summary_large_image"><meta property="twitter:site" content="@JRaviLab"><meta property="twitter:creator" content="@JRaviLab"><meta property="og:site_name" content="JRaviLab"><meta property="og:url" content="/authors/evan-p-brenner/"><meta property="og:title" content="Evan Brenner | JRaviLab"><meta property="og:description" content="Janani Ravi's Lab"><meta property="og:image" content="/img/jananiravi-grp-webpage-logo.png"><meta property="twitter:image" content="/img/jananiravi-grp-webpage-logo.png"><meta property="og:locale" content="en-us"><meta property="og:updated_time" content="2024-05-29T00:00:00+00:00"><title>Evan Brenner | JRaviLab</title></head><body id=top data-spy=scroll data-offset=70 data-target=#TableOfContents class=dark><aside class=search-results id=search><div class=container><section class=search-header><div class="row no-gutters justify-content-between mb-3"><div class=col-6><h1>Search</h1></div><div class="col-6 col-search-close"><a class=js-search href=#><i class="fas fa-times-circle text-muted" aria-hidden=true></i></a></div></div><div id=search-box><input name=q id=search-query placeholder=Search... autocapitalize=off autocomplete=off autocorrect=off spellcheck=false type=search></div></section><section class=section-search-results><div id=search-hits></div></section></div></aside><nav class="navbar navbar-expand-lg navbar-light compensate-for-scrollbar" id=navbar-main><div class=container><div class="d-none d-lg-inline-flex"><a class=navbar-brand href=/>JRaviLab</a></div><button type=button class=navbar-toggler data-toggle=collapse data-target=#navbar-content aria-controls=navbar aria-expanded=false aria-label="Toggle navigation"> |
3 | | -<span><i class="fas fa-bars"></i></span></button><div class="navbar-brand-mobile-wrapper d-inline-flex d-lg-none"><a class=navbar-brand href=/>JRaviLab</a></div><div class="navbar-collapse main-menu-item collapse justify-content-start" id=navbar-content><ul class="navbar-nav d-md-inline-flex"><li class=nav-item><a class=nav-link href=/#about_group><span>Home</span></a></li><li class=nav-item><a class=nav-link href=/#interests><span>Interests</span></a></li><li class=nav-item><a class=nav-link href=/#news><span>News</span></a></li><li class=nav-item><a class=nav-link href=/#about><span>Team</span></a></li><li class=nav-item><a class=nav-link href=/#publications><span>Papers</span></a></li><li class=nav-item><a class=nav-link href=/#projects><span>Projects</span></a></li><li class=nav-item><a class=nav-link href=/#talks><span>Talks</span></a></li><li class=nav-item><a class=nav-link href=/#posts><span>Posts</span></a></li><li class=nav-item><a class=nav-link href=/#gallery><span>Photos</span></a></li><li class=nav-item><a class=nav-link href=/#contact><span>Contact</span></a></li></ul></div><ul class="nav-icons navbar-nav flex-row ml-auto d-flex pl-md-2"><li class=nav-item><a class="nav-link js-search" href=#><i class="fas fa-search" aria-hidden=true></i></a></li><li class=nav-item><a class="nav-link js-dark-toggle" href=#><i class="fas fa-moon" aria-hidden=true></i></a></li></ul></div></nav><section id=profile-page class=pt-5><div class=container><div class=row><div class="col-12 col-lg-4"><div id=profile><img class="avatar avatar-circle" src=/authors/evan-p-brenner/avatar_hu7c333552fa9c4f50299cd6fefc0b55fa_1154387_270x270_fill_q90_lanczos_center.jpg alt=Avatar><div class=portrait-title><h2>Evan Brenner</h2><h3>Postdoctoral Researcher</h3><h3><a href=https://msu.edu target=_blank rel=noopener><span>Michigan State University</span></a></h3></div><ul class=network-icon aria-hidden=true><li><a href=https://github.com/epbrenner target=_blank rel=noopener><i class="fab fa-github big-icon"></i></a></li><li><a href=https://twitter.com/EvanBrenner11 target=_blank rel=noopener><i class="fab fa-twitter big-icon"></i></a></li></ul></div></div><div class="col-12 col-lg-8"><h2 id=accomplishments>Accomplishments</h2><ul><li>2023: NIH NLM Computational Biosciences T15 Postdoctoral Fellowship</li></ul><h2 id=presentations>Presentations</h2><h3 id=posters>Posters</h3><p><em>Coming soon!</em></p><h2 id=publications>Publications</h2><ul><li>Burke JT<sup>*</sup>, Krol JD<sup>*</sup>, Chen SZ<sup>*</sup>, Sosinski LM<sup>*</sup>, Alquaddoomi FS, Rubinetti VP, <strong>Brenner EP</strong>, Wolfe EP, Amolitos S, Reason KM, Johnston JB, Ravi J<sup>#</sup>. MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny. |
4 | | -<a href=https://doi.org/10.1101/2022.02.18.461833 target=_blank rel=noopener>bioRxiv</a> |
5 | | -<a href=http://jravilab.org/molevolvr target=_blank rel=noopener>Webapp</a></li><li>Ravi J<sup>#</sup>, Anantharaman V, <strong>Chen SZ</strong>, Brenner EP, Datta, P, Aravind L<sup>#</sup>, Gennaro ML<sup>#</sup>. Phage-shock-protein (PSP) Envelope Stress Response: Evolutionary History & Discovery of Novel Players. |
| 3 | +<span><i class="fas fa-bars"></i></span></button><div class="navbar-brand-mobile-wrapper d-inline-flex d-lg-none"><a class=navbar-brand href=/>JRaviLab</a></div><div class="navbar-collapse main-menu-item collapse justify-content-start" id=navbar-content><ul class="navbar-nav d-md-inline-flex"><li class=nav-item><a class=nav-link href=/#about_group><span>Home</span></a></li><li class=nav-item><a class=nav-link href=/#interests><span>Interests</span></a></li><li class=nav-item><a class=nav-link href=/#news><span>News</span></a></li><li class=nav-item><a class=nav-link href=/#about><span>Team</span></a></li><li class=nav-item><a class=nav-link href=/#publications><span>Papers</span></a></li><li class=nav-item><a class=nav-link href=/#projects><span>Projects</span></a></li><li class=nav-item><a class=nav-link href=/#talks><span>Talks</span></a></li><li class=nav-item><a class=nav-link href=/#posts><span>Posts</span></a></li><li class=nav-item><a class=nav-link href=/#gallery><span>Photos</span></a></li><li class=nav-item><a class=nav-link href=/#contact><span>Contact</span></a></li></ul></div><ul class="nav-icons navbar-nav flex-row ml-auto d-flex pl-md-2"><li class=nav-item><a class="nav-link js-search" href=#><i class="fas fa-search" aria-hidden=true></i></a></li><li class=nav-item><a class="nav-link js-dark-toggle" href=#><i class="fas fa-moon" aria-hidden=true></i></a></li></ul></div></nav><section id=profile-page class=pt-5><div class=container><div class=row><div class="col-12 col-lg-4"><div id=profile><img class="avatar avatar-circle" src=/authors/evan-p-brenner/avatar_hu7c333552fa9c4f50299cd6fefc0b55fa_1154387_270x270_fill_q90_lanczos_center.jpg alt=Avatar><div class=portrait-title><h2>Evan Brenner</h2><h3>Postdoctoral Researcher</h3><h3><a href=https://msu.edu target=_blank rel=noopener><span>Michigan State University</span></a></h3></div><ul class=network-icon aria-hidden=true><li><a href=https://github.com/epbrenner target=_blank rel=noopener><i class="fab fa-github big-icon"></i></a></li><li><a href=https://www.linkedin.com/in/evan-brenner-600b00290/ target=_blank rel=noopener><i class="fab fa-linkedin big-icon"></i></a></li></ul></div></div><div class="col-12 col-lg-8"><h2 id=accomplishments>Accomplishments</h2><ul><li>2023: NIH NLM Computational Biosciences T15 Postdoctoral Fellowship</li><li>2024: 3 first-place awards for talks with cash prizes. Noted below under ‘Talks’.</li></ul><h2 id=presentations>Presentations</h2><h3 id=talks>Talks</h3><ul><li><ol start=2025><li>DBMI Bytes to Bedside Seminar Series, Aurora, CO</li></ol></li><li><ol start=2025><li>Pacific Northwest National Laboratory. DOE BRAVE symposium. Richland, WA</li></ol></li><li><sup>$</sup>2024. University of Colorado Annual Orthopedic Research Symposium & D’Ambrosia Diversity Lectureship, Aurora, CO. Won first place with a $1000 cash prize towards any (inter)national conference.</li><li><sup>$</sup>2024. ISMB (by the International Society for Computational Biology). Montreal, Canada. Won first place (with a cash prize) for short talks at Evolution and Comparative Genomics. Also, received a registration award.</li><li><ol start=2024><li>Biomedical Informatics Retreat, Denver, CO.</li></ol></li><li><ol start=2024><li>qCMB symposium. Fort Collins, CO</li></ol></li><li><sup>$</sup>2024. Rocky Mountain Branch, American Society for Microbiology. Boulder, CO. EB won first place (with a cash prize) for postdoc talks.</li></ul><h3 id=posters>Posters</h3><ul><li><ol start=2025><li>Colorado Immunology & Microbiology Conference. Steamboat Springs, CO</li></ol></li><li><ol start=2025><li>Biomedical Informatics Retreat, Aurora, CO</li></ol></li><li><ol start=2023><li>Biomedical Informatics Retreat, Aurora, CO</li></ol></li></ul><h2 id=publications>Publications</h2><ul><li>Ghosh A^, <strong>Brenner EP^</strong>, Vang CK^, Wolfe EP^, Burke JT, Lesiyon RL, Manpearl KR, Sridhar V, Krol JD, Boyer EA, Bilodeaux JMR, Jongnarangsin K, Majlessi EJ, Ravi J*. From sequence to signature: Uncovering multiscale AMR features across multiple pathogens with supervised machine learning. bioRxiv. 2025. |
| 4 | +<a href=https://doi.org/10.1101/2025.07.03.663053 target=_blank rel=noopener>DOI</a> |
| 5 | +<a href=https://jravilab.org/amr target=_blank rel=noopener>Dashboard</a></li><li>Ghosh A^, Vang CK^, <strong>Brenner EP^</strong>, Ravi J*. Unlocking antimicrobial resistance with multiomics and machine learning. Trends in Microbiology. 2025. |
| 6 | +<a href=https://pubmed.ncbi.nlm.nih.gov/40425396/ target=_blank rel=noopener>DOI</a></li><li>Alquaddoomi FS^, Burke JT^, Sosinski L^, Mayer DA, <strong>Brenner EP</strong>, Chen SZ, Krol JD, Wolfe EP, Rubinetti VP, Amolitos S, Reason KM, Johnston JB, Ravi J*. MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny. bioRxiv. 2022 |
| 7 | +<a href=https://doi.org/10.1101/2022.02.18.461833 target=_blank rel=noopener>DOI</a> |
| 8 | +<a href=http://jravilab.org/molevolvr target=_blank rel=noopener>Webapp</a></li><li>Ravi J<sup>#</sup>, Anantharaman V, Chen SZ, <strong>Brenner EP</strong>, Datta, P, Aravind L<sup>#</sup>, Gennaro ML<sup>#</sup>. Phage-shock-protein (PSP) Envelope Stress Response: Evolutionary History & Discovery of Novel Players. |
6 | 9 | <a href=https://doi.org/10.1101/2020.09.24.301986 target=_blank rel=noopener>bioRxiv 2020</a> | |
7 | | -<a href=https://jravilab.shinyapps.io/psp-evolution target=_blank rel=noopener>Webapp</a>.</li></ul><p><sup>*</sup> Co-primary; <sup>#</sup> Co-corresponding.</p><div class=row><div class=col-md-5><h3>Interests</h3><ul class=ul-interests><li>Microbial pathogenesis</li><li>Phylogenomics</li><li>Bioinformatics</li></ul></div><div class=col-md-7><h3>Education</h3><ul class="ul-edu fa-ul"><li><i class="fa-li fas fa-graduation-cap"></i><div class=description><p class=course>PhD in Comparative Medicine and Integrative Biology, 2023</p><p class=institution>Michigan State University</p></div></li><li><i class="fa-li fas fa-graduation-cap"></i><div class=description><p class=course>BS in Molecular Biology, Biochemistry, and Bioinformatics, 2012</p><p class=institution>Towson University</p></div></li></ul></div></div></div></div><div class="article-widget content-widget-hr"><h3>Latest</h3><ul><li><a href=/publication/psp_evolution/>The phage shock protein (PSP) envelope stress response: discovery of novel partners and evolutionary history</a></li><li><a href=/publication/brazil_genomes_mtb/>Discovery of a predominant and distinct lineage of Mycobacterium tuberculosis in Brazilian indigenous population</a></li></ul></div></div></section><script src=https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin=anonymous></script> |
| 10 | +<a href=https://jravilab.shinyapps.io/psp-evolution target=_blank rel=noopener>Webapp</a>.</li></ul><p>^Co-primary; *Co-corresponding.</p><div class=row><div class=col-md-5><h3>Interests</h3><ul class=ul-interests><li>Microbial pathogenesis</li><li>Phylogenomics</li><li>Bioinformatics</li></ul></div><div class=col-md-7><h3>Education</h3><ul class="ul-edu fa-ul"><li><i class="fa-li fas fa-graduation-cap"></i><div class=description><p class=course>PhD in Comparative Medicine and Integrative Biology, 2023</p><p class=institution>Michigan State University</p></div></li><li><i class="fa-li fas fa-graduation-cap"></i><div class=description><p class=course>BS in Molecular Biology, Biochemistry, and Bioinformatics, 2012</p><p class=institution>Towson University</p></div></li></ul></div></div></div></div><div class="article-widget content-widget-hr"><h3>Latest</h3><ul><li><a href=/publication/psp_evolution/>The phage shock protein (PSP) envelope stress response: discovery of novel partners and evolutionary history</a></li><li><a href=/publication/brazil_genomes_mtb/>Discovery of a predominant and distinct lineage of Mycobacterium tuberculosis in Brazilian indigenous population</a></li></ul></div></div></section><script src=https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin=anonymous></script> |
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