update external libraries (JabRef#10536)

Author: Siedlerchr

external-libraries.md

@@ -70,6 +70,13 @@ URL:     https://github.com/dlsc-software-consulting-gmbh/UnitFX
 License: Apache-2.0
 ```
 
+```yaml
+Id:      com.fasterxml:aalto-xml
+Project: Jackson Project
+URL:     https://github.com/FasterXML/aalto-xml
+License: Apache-2.0
+```
+
 ```yaml
 Id:      com.fasterxml.jackson
 Project: Jackson Project
@@ -155,20 +162,6 @@ URL:     https://github.com/Kong/unirest-java
 License: MIT
 ```
 
-```yaml
-Id:      com.microsoft.azure:applicationinsights-core
-Project: Application Insights SDK for Java
-URL:     https://github.com/Microsoft/ApplicationInsights-Java
-License: MIT
-```
-
-```yaml
-Id:      com.microsoft.azure:applicationinsights-logging-log4j2
-Project: Application Insights SDK for Java
-URL:     https://github.com/Microsoft/ApplicationInsights-Java
-License: MIT
-```
-
 ```yaml
 Id:      com.oracle.ojdbc:ojdbc10
 Project: Oracle's JDBC drivers
@@ -264,16 +257,22 @@ License: Apache-2.0
 Id:      commons-digester:commons-digester
 Project: Apache Commons Digester
 URL:     https://commons.apache.org/proper/commons-digester/
-License: Apache-2.0
 ```
 
 ```yaml
-Id:      commons-validator:commons-validator
-Project: Apache Commons Validator
-URL:     https://commons.apache.org/proper/commons-validator/
+Id:      de.rototor.jeuclid:jeuclid-core
+Project: JEuclid
+URL:     https://github.com/rototor/jeuclid
 License: Apache-2.0
 ```
 
+```yaml
+Id:      de.rototor.snuggletex:snuggletex-core
+Project: SnuggleTeX
+URL:     https://github.com/rototor/snuggletex
+License: BSD
+```
+
 ```yaml
 Id:      de.saxsys:mvvmfx
 Project: mvvm(fx)
@@ -636,45 +635,36 @@ License: BSD-3-Clause
 
 ## Sorted list of runtime dependencies output by gradle
 
-1. `gradlew dependencies > build/dependencies.txt`
+1. `./gradlew dependencies > build/dependencies.txt`
 2. Manually edit depedencies.txt to contain the tree of "compileClasspath" and "implementation" only. Otherwise, libraries such as "Apache Commons Lang 3" are missed.
 3. (on WSL) `sed 's/[^a-z]*//' < build/dependencies.txt | sed "s/\(.*\) .*/\1/" | grep -v "\->" | sort | uniq > build/dependencies-for-external-libraries.txt`
 
 ```text
 at.favre.lib:hkdf:1.1.0
-com.dlsc.gemsfx:gemsfx:1.77.0
+com.dlsc.gemsfx:gemsfx:1.82.0
 com.dlsc.pickerfx:pickerfx:1.2.0
 com.dlsc.unitfx:unitfx:1.0.10
-com.fasterxml.jackson.core:jackson-annotations:2.15.2
-com.fasterxml.jackson.core:jackson-core:2.15.2
-com.fasterxml.jackson.core:jackson-databind:2.15.2
-com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.15.2
-com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.15.2
-com.fasterxml.jackson:jackson-bom:2.15.2
+com.fasterxml.jackson.core:jackson-annotations:2.15.3
+com.fasterxml.jackson.core:jackson-core:2.15.3
+com.fasterxml.jackson.core:jackson-databind:2.15.3
+com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.15.3
+com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.15.3
+com.fasterxml.jackson:jackson-bom:2.15.3
+com.fasterxml:aalto-xml:1.3.1
 com.github.hypfvieh:dbus-java-core:4.2.1
 com.github.hypfvieh:dbus-java-transport-native-unixsocket:4.2.1
 com.github.javakeyring:java-keyring:1.0.4
 com.github.sialcasa.mvvmFX:mvvmfx-validation:f195849ca9
 com.github.tomtung:latex2unicode_2.13:0.3.2
 com.google.code.gson:gson:2.10
-com.googlecode.javaewah:JavaEWAH:1.2.3
-com.google.errorprone:error_prone_annotations:2.18.0
+com.google.errorprone:error_prone_annotations:2.21.1
 com.google.guava:failureaccess:1.0.1
-com.google.guava:guava:32.1.2-jre
-com.google.guava:guava-parent:32.1.2-jre
+com.google.guava:guava:32.1.3-jre
 com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava
 com.google.j2objc:j2objc-annotations:2.8
-com.h2database:h2-mvstore:2.2.220
+com.googlecode.javaewah:JavaEWAH:1.2.3
+com.h2database:h2-mvstore:2.2.224
 com.konghq:unirest-java:3.14.5
-com.microsoft.azure:applicationinsights-core:2.4.1
-com.microsoft.azure:applicationinsights-logging-log4j2:2.4.1
-commons-beanutils:commons-beanutils:1.9.4
-commons-cli:commons-cli:1.5.0
-commons-codec:commons-codec:1.15
-commons-collections:commons-collections:3.2.2
-commons-digester:commons-digester:2.1
-commons-logging:commons-logging:1.2
-commons-validator:commons-validator:1.7
 com.oracle.ojdbc:ojdbc10:19.3.0.0
 com.oracle.ojdbc:ons:19.3.0.0
 com.oracle.ojdbc:osdt_cert:19.3.0.0
@@ -684,10 +674,8 @@ com.oracle.ojdbc:ucp:19.3.0.0
 com.squareup.okhttp3:okhttp:3.12.0
 com.squareup.okio:okio:1.15.0
 com.squareup.retrofit2:retrofit:2.6.1
-com.sun.activation:jakarta.activation:2.0.1
-com.sun.istack:istack-commons-runtime:4.0.1
+com.sun.istack:istack-commons-runtime:4.1.2
 com.tobiasdiez:easybind:2.2.1-SNAPSHOT
-com.vladsch.flexmark:flexmark:0.64.8
 com.vladsch.flexmark:flexmark-util-ast:0.64.8
 com.vladsch.flexmark:flexmark-util-builder:0.64.8
 com.vladsch.flexmark:flexmark-util-collection:0.64.8
@@ -698,80 +686,113 @@ com.vladsch.flexmark:flexmark-util-html:0.64.8
 com.vladsch.flexmark:flexmark-util-misc:0.64.8
 com.vladsch.flexmark:flexmark-util-sequence:0.64.8
 com.vladsch.flexmark:flexmark-util-visitor:0.64.8
+com.vladsch.flexmark:flexmark:0.64.8
+commons-beanutils:commons-beanutils:1.9.4
+commons-cli:commons-cli:1.5.0
+commons-codec:commons-codec:1.16.0
+commons-collections:commons-collections:3.2.2
+commons-digester:commons-digester:2.1
+commons-logging:commons-logging:1.2
+commons-validator:commons-validator:1.7
+de.rototor.jeuclid:jeuclid-core:3.1.11
+de.rototor.snuggletex:snuggletex-core:1.3.0
+de.rototor.snuggletex:snuggletex-jeuclid:1.3.0
+de.rototor.snuggletex:snuggletex:1.3.0
 de.saxsys:mvvmfx:1.8.0
 de.swiesend:secret-service:1.8.1-jdk17
 de.undercouch:citeproc-java:3.0.0-beta.2
 eu.lestard:doc-annotations:0.2
 info.debatty:java-string-similarity:2.0.0
 io.github.java-diff-utils:java-diff-utils:4.12
+jakarta.activation:jakarta.activation-api:2.1.2
 jakarta.annotation:jakarta.annotation-api:2.1.1
 jakarta.inject:jakarta.inject-api:2.0.1
-jakarta.xml.bind:jakarta.xml.bind-api:3.0.1
+jakarta.validation:jakarta.validation-api:3.0.2
+jakarta.ws.rs:jakarta.ws.rs-api:3.1.0
+jakarta.xml.bind:jakarta.xml.bind-api:4.0.1
 javax.measure:unit-api:2.1.2
-net.harawata:appdirs:1.2.1
-net.java.dev.jna:jna:5.13.0
+net.harawata:appdirs:1.2.2
 net.java.dev.jna:jna-platform:5.13.0
+net.java.dev.jna:jna:5.13.0
 net.jcip:jcip-annotations:1.0
 net.jodah:typetools:0.6.1
 one.jpro.jproutils:tree-showing:0.2.2
-org.antlr:antlr4-runtime:4.13.0
+org.antlr:antlr4-runtime:4.13.1
 org.apache.commons:commons-csv:1.10.0
 org.apache.commons:commons-lang3:3.13.0
 org.apache.httpcomponents:httpasyncclient:4.1.5
 org.apache.httpcomponents:httpclient:4.5.13
-org.apache.httpcomponents:httpcore:4.4.13
 org.apache.httpcomponents:httpcore-nio:4.4.13
+org.apache.httpcomponents:httpcore:4.4.13
 org.apache.httpcomponents:httpmime:4.5.13
-org.apache.lucene:lucene-analysis-common:9.7.0
-org.apache.lucene:lucene-core:9.7.0
-org.apache.lucene:lucene-highlighter:9.7.0
-org.apache.lucene:lucene-queries:9.7.0
-org.apache.lucene:lucene-queryparser:9.7.0
-org.apache.lucene:lucene-sandbox:9.7.0
+org.apache.logging.log4j:log4j-api:2.20.0
+org.apache.logging.log4j:log4j-to-slf4j:2.20.0
+org.apache.lucene:lucene-analysis-common:9.8.0
+org.apache.lucene:lucene-core:9.8.0
+org.apache.lucene:lucene-highlighter:9.8.0
+org.apache.lucene:lucene-queries:9.8.0
+org.apache.lucene:lucene-queryparser:9.8.0
+org.apache.lucene:lucene-sandbox:9.8.0
 org.apache.pdfbox:fontbox:3.0.0
-org.apache.pdfbox:pdfbox:3.0.0
 org.apache.pdfbox:pdfbox-io:3.0.0
+org.apache.pdfbox:pdfbox:3.0.0
 org.apache.pdfbox:xmpbox:3.0.0
 org.bouncycastle:bcprov-jdk18on:1.76
-org.checkerframework:checker-qual:3.33.0
+org.checkerframework:checker-qual:3.37.0
+org.codehaus.woodstox:stax2-api:4.2
 org.controlsfx:controlsfx:11.1.2
-org.eclipse.jgit:org.eclipse.jgit:6.6.0.202305301015-r
+org.eclipse.jgit:org.eclipse.jgit:6.7.0.202309050840-r
 org.fxmisc.flowless:flowless:0.7.1
 org.fxmisc.richtext:richtextfx:0.11.1
 org.fxmisc.undo:undofx:2.1.1
 org.fxmisc.wellbehaved:wellbehavedfx:0.3.3
-org.glassfish.jaxb:jaxb-core:3.0.2
-org.glassfish.jaxb:jaxb-runtime:3.0.2
-org.glassfish.jaxb:txw2:3.0.2
-org.jabref:afterburner.fx:1.1.0-SNAPSHOT
+org.glassfish.grizzly:grizzly-framework:4.0.0
+org.glassfish.grizzly:grizzly-http-server:4.0.0
+org.glassfish.grizzly:grizzly-http:4.0.0
+org.glassfish.hk2.external:aopalliance-repackaged:3.0.4
+org.glassfish.hk2:hk2-api:3.0.4
+org.glassfish.hk2:hk2-locator:3.0.4
+org.glassfish.hk2:hk2-utils:3.0.4
+org.glassfish.hk2:osgi-resource-locator:1.0.3
+org.glassfish.jaxb:jaxb-core:4.0.3
+org.glassfish.jaxb:jaxb-runtime:4.0.3
+org.glassfish.jaxb:txw2:4.0.3
+org.glassfish.jersey.containers:jersey-container-grizzly2-http:3.1.3
+org.glassfish.jersey.core:jersey-client:3.1.3
+org.glassfish.jersey.core:jersey-common:3.1.3
+org.glassfish.jersey.core:jersey-server:3.1.3
+org.glassfish.jersey.inject:jersey-hk2:3.1.3
+org.jabref:afterburner.fx:2.0.0
+org.javassist:javassist:3.29.2-GA
 org.jbibtex:jbibtex:1.0.20
 org.jetbrains:annotations:24.0.1
 org.jooq:jool:0.9.15
 org.jsoup:jsoup:1.16.1
 org.kordamp.ikonli:ikonli-bootstrapicons-pack:12.3.1
 org.kordamp.ikonli:ikonli-core:12.3.1
 org.kordamp.ikonli:ikonli-javafx:12.3.1
-org.kordamp.ikonli:ikonli-materialdesign2-pack:12.3.1
-org.kordamp.ikonli:ikonli-materialdesign-pack:12.3.1
 org.kordamp.ikonli:ikonli-material-pack:12.3.1
-org.libreoffice:libreoffice:7.5.3
-org.libreoffice:unoloader:7.6.0
+org.kordamp.ikonli:ikonli-materialdesign-pack:12.3.1
+org.kordamp.ikonli:ikonli-materialdesign2-pack:12.3.1
+org.libreoffice:libreoffice:7.6.1
+org.libreoffice:unoloader:7.6.1
 org.mariadb.jdbc:mariadb-java-client:2.7.9
-org.openjfx:javafx-base:20
-org.openjfx:javafx-controls:20
-org.openjfx:javafx-fxml:20
-org.openjfx:javafx-graphics:20
-org.openjfx:javafx-media:20
-org.openjfx:javafx-swing:20
-org.openjfx:javafx-web:20
+org.openjfx:javafx-base:20.0.2
+org.openjfx:javafx-controls:20.0.2
+org.openjfx:javafx-fxml:20.0.2
+org.openjfx:javafx-graphics:20.0.2
+org.openjfx:javafx-media:20.0.2
+org.openjfx:javafx-swing:20.0.2
+org.openjfx:javafx-web:20.0.2
 org.postgresql:postgresql:42.6.0
 org.reactfx:reactfx:2.0-M5
 org.scala-lang:scala-library:2.13.8
-org.slf4j:slf4j-api:2.0.7
+org.slf4j:jul-to-slf4j:2.0.9
+org.slf4j:slf4j-api:2.0.9
 org.tinylog:slf4j-tinylog:2.6.2
 org.tinylog:tinylog-api:2.6.2
 org.tinylog:tinylog-impl:2.6.2
-org.yaml:snakeyaml:2.0
+org.yaml:snakeyaml:2.1
 pt.davidafsilva.apple:jkeychain:1.1.0
 tech.units:indriya:2.1.2
 tech.uom.lib:uom-lib-common:2.1