Update docs to new structure (#13039)

* Use mise instead of GitHub actions

* Do not "fix" main at initial setup - main is upstream/main

* Use mise - and update documentation

* Add mise dr

* Use eval mise hook-env

Suggested at jdx/mise#4973 (comment)

* Discard changes to .github/workflows/deployment.yml

* Discard changes to .github/workflows/tests-fetchers.yml

* Discard changes to .github/workflows/tests.yml

* Discard changes to build-logic/src/main/kotlin/buildlogic.java-common-conventions.gradle.kts

* Fix ref

* Replace mise.toml by .sdkmanrc

* Fix ref

* pre-02-software, pre-03-code, and intellij-11-code-into-ide

* Refine 11 and 12

* Finish 12

* Minor refinements of bibtex.md

* Apply suggestions from code review

Co-authored-by: Subhramit Basu <[email protected]>

* Address review comments

---------

Co-authored-by: Subhramit Basu <[email protected]>

Author: koppor

.sdkmanrc

@@ -0,0 +1,2 @@
+java=24.0.1-tem
+#visualvm=2.1.10

build-logic/src/main/kotlin/buildlogic.java-common-conventions.gradle.kts

@@ -42,11 +42,11 @@ java {
         // - build.gradle -> jacoco -> toolVersion (because JaCoCo does not support newest JDK out of the box. Check versions at https://www.jacoco.org/jacoco/trunk/doc/changes.html)
         // - .devcontainer/devcontainer.json#L34 and
         // - .moderne/moderne.yml
-        // - .github/workflows/deployment*.yml
+        // - .github/workflows/binaries*.yml
         // - .github/workflows/tests*.yml
         // - .github/workflows/update-gradle-wrapper.yml
         // - docs/getting-into-the-code/guidelines-for-setting-up-a-local-workspace/intellij-12-build.md
-        // - mise.toml
+        // - .sdkmanrc
         languageVersion = JavaLanguageVersion.of(24)
         // See https://docs.gradle.org/current/javadoc/org/gradle/jvm/toolchain/JvmVendorSpec.html for a full list
         // See https://docs.gradle.org/current/javadoc/org/gradle/jvm/toolchain/JvmVendorSpec.html for a full list

docs/code-howtos/bibtex.md

@@ -5,13 +5,15 @@ parent: Code Howtos
 
 The main class to handle a single BibTeX entry is `org.jabref.model.entry.BibEntry`.
 The content of a `.bib` file is handled in `org.jabref.model.database.BibDatabase`.
-Things not written in the `.bib` file, but required for handling are stored in `org.jabref.model.database.BibDatabaseContext`.
+The BibTeX contents (as in the `BibDatabase`) along with some metadata required for handling are stored in `org.jabref.model.database.BibDatabaseContext`.
 For instance, this stores the mode of the library, which can be BibTeX or `biblatex`.
 
 Standard BibTeX fields known to JabRef are modeled in `org.jabref.model.entry.field.StandardField`.
 A user-defined field not known to JabRef's code is modelled in `org.jabref.model.entry.field.UnknownField`.
 Typically, to get from a String to a `Field`, one needs to use `org.jabref.model.entry.field.FieldFactory#parseField(java.lang.String)`.
 
+Reading of `.bib` files is done in `org.jabref.logic.importer.fileformat.BibtexImporter`.
+
 ## Cross-references
 
 BibTeX allows for referencing other entries by the field `crossref` (`org.jabref.model.entry.field.StandardField#CROSSREF`).