environment.yml

# Conda environment for QCD Vortex Entanglement Analysis
# 
# Create environment:
#   conda env create -f environment.yml
#
# Activate:
#   conda activate qcd-vortex
#
# Update:
#   conda env update -f environment.yml --prune

name: qcd-vortex

channels:
  - conda-forge
  - defaults

dependencies:
  # Python version
  - python=3.10

  # Core scientific libraries (from conda-forge for better compatibility)
  - numpy>=1.24.0
  - scipy>=1.10.0
  - matplotlib>=3.7.0
  - pandas>=2.0.0
  - h5py>=3.8.0
  - scikit-learn>=1.3.0
  - tqdm>=4.65.0
  - pyyaml>=6.0
  - joblib>=1.3.0

  # System dependencies (better via conda)
  - gcc_linux-64  # Linux
  - gxx_linux-64  # Linux
  # - clang_osx-64  # macOS (uncomment if on macOS)
  # - clangxx_osx-64  # macOS (uncomment if on macOS)
  - cmake>=3.20
  - make

  # Optional: Belle II dependencies (ROOT)
  # Uncomment if you need Belle II analysis
  # - root>=6.28.0

  # Optional: Jupyter
  - jupyterlab>=4.0.0
  - notebook>=7.0.0
  - ipykernel>=6.25.0
  - ipywidgets>=8.1.0

  # Visualization
  - plotly>=5.17.0
  - seaborn>=0.13.0

  # Development tools
  - pytest>=7.4.0
  - pytest-cov>=4.1.0
  - black>=23.7.0
  - flake8>=6.1.0
  - mypy>=1.5.0
  - isort>=5.12.0

  # pip packages (not available in conda or better from PyPI)
  - pip
  - pip:
      # Tensor networks (only via pip)
      - seemps2>=1.0.0

      # XGBoost (better from pip for latest version)
      - xgboost>=2.0.0

      # Belle II analysis (if not using ROOT from conda)
      - uproot>=5.0.0
      - awkward>=2.0.0
      - particle>=0.23.0
      - iminuit>=2.24.0

      # IBM Quantum
      - qiskit>=1.0.0
      - qiskit-ibm-runtime>=0.19.0
      - qiskit-aer>=0.13.0

      # Install project in editable mode
      - -e .