changed default ddG colormap no coverage color to yellow (#360)

* changed default ddG colormap no coverage color to yellow

gray color on some screens / projectors looks too much like purple

* set missing color to light gray

Author: Jhsmit

pyhdx/plot.py

@@ -1139,7 +1139,7 @@ def __init__(self):
 
         self.cmaps = {
             "dG": set_bad(pplt.Colormap(tol_cmap("rainbow_PuRd")).reversed()),
-            "ddG": set_bad(tol_cmap("PRGn").reversed()),
+            "ddG": set_bad(tol_cmap("PRGn").reversed(), color="#d8d8d8"),
             "rfu": set_bad(pplt.Colormap(cc.cm.gouldian)),
             "drfu": set_bad(pplt.Colormap(cc.cm.diverging_bwr_20_95_c54)),  # =CET_D1A
             "d_uptake": set_bad(pplt.Colormap("Dense")),

templates/09_figure_output.py

@@ -12,7 +12,6 @@
     ddG_scatter_figure,
     dG_scatter_figure,
     linear_bars_figure,
-    rainbowclouds_figure,
 )
 from pyhdx.support import apply_cmap, color_pymol
 
@@ -48,15 +47,18 @@
 pplt.show()
 
 # %%
-
-linear_bars_figure(plot_data)
+# %%
+linear_bars_figure(dG_df, groupby="fit_ID")
 pplt.show()
 
 # %%
 
-rainbowclouds_figure(plot_data)
+linear_bars_figure(dG_df, groupby="fit_ID", reference="SecB_tetramer")
 pplt.show()
 
+# %%
+
+
 # %%
 protein_states = plot_data.columns.get_level_values(0).unique()
 ddG_scatter_figure(plot_data, reference=protein_states[0])