config.ini

[DEFAULT]
vep_cache = $HOME/.vep
pvs1levels = data/PVS1.level
gene_alias = data/hgnc.symbol.previous.tsv
gene_trans = data/clinvar_trans_stats.tsv

[HG19]
genome = data/hg19.fa
transcript = data/ncbiRefSeq_hg19.gpe
domain = data/functional_domains_hg19.bed
hotspot = data/mutational_hotspots_hg19.bed
curated_region = data/expert_curated_domains_hg19.bed
exon_lof_popmax = data/exon_lof_popmax_hg19.bed
pathogenic_site = data/clinvar_pathogenic_GRCh37.vcf

[HG38]
genome = data/hg38.fa
transcript = data/ncbiRefSeq_hg38.gpe
domain = data/functional_domains_hg38.bed
hotspot = data/mutational_hotspots_hg38.bed
curated_region = data/expert_curated_domains_hg38.bed
exon_lof_popmax = data/exon_lof_popmax_hg38.bed
pathogenic_site = data/clinvar_pathogenic_GRCh38.vcf