These steps will recreate the problem:
- Start SDV in windowed mode. Not full-screen windowed mode.
- Click on a bot to open its console.
- Resize the game window to a full-screen window. (When I say "resize", do not use the in-game settings to change it.)
- Drag the console window to the right and down, just enough so that you can still see the X close button.
- Close the bot's console window by hitting ESC because at this point the X button is not visible.
- Reopen the bot's console window.