formal stuff

Author: JonasRieger

R/SCLOP.R

@@ -109,7 +109,7 @@ SCLOP.pairwise.default = function(sims){
   names = unique(sapply(strsplit(colnames(sims), "\\."), function(x) x[1]))
 
   combs = combn(names, 2)
-  vals = apply(combs, 2, function(x) SCLOP(dendTopics.intern(sims = sims, ind = paste0(x, "\\."))))
+  vals = apply(combs, 2, function(x) SCLOP(dendTopics_intern(sims = sims, ind = paste0(x, "\\."))))
 
   mat = matrix(ncol = length(names), nrow = length(names))
   i = match(combs[2,], names)

R/dendTopics.R

@@ -99,7 +99,7 @@ dendTopics.default = function(sims, ind, method = "complete"){
   invisible(dend)
 }
 
-dendTopics.intern = function(sims, ind){
+dendTopics_intern = function(sims, ind){
   ind = rowSums(sapply(ind, grepl, x = colnames(sims))) > 0
   dend = as.dendrogram(hclust(as.dist(1 - sims[ind, ind]), method = "complete"))
 

R/rboTopics.R

@@ -17,8 +17,7 @@
 #' @references Webber, William, Alistair Moffat and Justin Zobel (2010).
 #' "A similarity measure for indefinite rankings".
 #' In: \emph{ACM Transations on Information Systems} 28(4), p.20:1–-20:38,
-#' DOI 10.1145/1852102.1852106,
-#' URL \url{https://doi.acm.org/10.1145/1852102.1852106}
+#' \doi{10.1145/1852102.1852106}.
 #'
 #' @family TopicSimilarity functions
 #'

README.md

@@ -3,7 +3,7 @@
 [![CRAN](https://www.r-pkg.org/badges/version/ldaPrototype)](https://cran.r-project.org/package=ldaPrototype)
 [![R build status](https://github.com/JonasRieger/ldaPrototype/workflows/R-CMD-check/badge.svg)](https://github.com/JonasRieger/ldaPrototype/actions)
 [![Build status](https://ci.appveyor.com/api/projects/status/6nm48mamn79n6xf4?svg=true)](https://ci.appveyor.com/project/JonasRieger/ldaprototype)
-[![codecov](https://codecov.io/gh/JonasRieger/ldaPrototype/branch/master/graph/badge.svg?token=IUWLTOW2HV)](https://codecov.io/gh/JonasRieger/ldaPrototype)
+[![codecov](https://codecov.io/gh/JonasRieger/ldaPrototype/branch/master/graph/badge.svg?token=IUWLTOW2HV)](https://app.codecov.io/gh/JonasRieger/ldaPrototype)
 [![DOI](https://zenodo.org/badge/187803702.svg)](https://zenodo.org/badge/latestdoi/187803702)
 
 ## Prototype of Multiple Latent Dirichlet Allocation Runs

inst/CITATION

@@ -1,6 +1,6 @@
 citHeader("To cite ldaPrototype in publications use:")
 
-citEntry(entry = "Article",
+bibentry(bibtype = "Article",
   title        = "{ldaPrototype}: A method in {R} to get a Prototype of multiple Latent Dirichlet Allocations",
   author       = "Jonas Rieger",
   journal      = "Journal of Open Source Software",