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README.md

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# AxisArrays
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[![Build Status](https://travis-ci.org/mbauman/AxisArrays.jl.svg?branch=master)](https://travis-ci.org/mbauman/AxisArrays.jl) [![Coverage Status](https://coveralls.io/repos/mbauman/AxisArrays.jl/badge.svg?branch=master)](https://coveralls.io/r/mbauman/AxisArrays.jl?branch=master)
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[![Build Status](https://travis-ci.org/JuliaArrays/AxisArrays.jl.svg?branch=master)](https://travis-ci.org/JuliaArrays/AxisArrays.jl) [![Coverage Status](https://coveralls.io/repos/JuliaArrays/AxisArrays.jl/badge.svg?branch=master)](https://coveralls.io/r/JuliaArrays/AxisArrays.jl?branch=master)
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This package for the Julia language provides an array type (the `AxisArray`) that knows about its dimension names and axis values.
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This allows for indexing with the axis name without incurring any runtime overhead.
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AxisArrays can also be indexed by the values of their axes, allowing column names or interval selections.
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This permits one to implement algorithms that are oblivious to the storage order of the underlying arrays.
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In contrast to similar approaches in [Images.jl](https://github.com/timholy/Images.jl) and [NamedArrays.jl](https://github.com/davidavdav/NamedArrays), this allows for type-stable selection of dimensions and compile-time axis lookup. It is also better suited for regularly sampled axes, like samples over time.
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Collaboration is welcome! This is still a work-in-progress. See [the roadmap](https://github.com/mbauman/AxisArrays.jl/issues/7) for the project's current direction.
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Collaboration is welcome! This is still a work-in-progress. See [the roadmap](https://github.com/JuliaArrays/AxisArrays.jl/issues/7) for the project's current direction.
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## Example of currently-implemented behavior:
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```julia
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julia> Pkg.clone("https://github.com/mbauman/Tuples.jl")
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Pkg.clone("https://github.com/mbauman/RangeArrays.jl")
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Pkg.clone("https://github.com/mbauman/AxisArrays.jl")
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julia> Pkg.clone("https://github.com/JuliaArrays/AxisArrays.jl")
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using AxisArrays, SIUnits
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import SIUnits.ShortUnits: s, ms, µs
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docs/make.jl

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deploydocs(
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deps = Deps.pip("mkdocs", "python-markdown-math"),
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repo = "github.com/mbauman/AxisArrays.jl.git",
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julia = "0.4"
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repo = "github.com/JuliaArrays/AxisArrays.jl.git",
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julia = "0.5"
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)

docs/mkdocs.yml

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site_name: AxisArrays.jl
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repo_url: https://github.com/mbauman/AxisArrays.jl
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repo_url: https://github.com/JuliaArrays/AxisArrays.jl
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site_description: Performant arrays where each dimension can have a named axis with values
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site_author: mbauman
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docs/src/index.md

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# AxisArrays
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[![Build Status](https://travis-ci.org/mbauman/AxisArrays.jl.svg?branch=master)](https://travis-ci.org/mbauman/AxisArrays.jl) [![Coverage Status](https://coveralls.io/repos/mbauman/AxisArrays.jl/badge.svg?branch=master)](https://coveralls.io/r/mbauman/AxisArrays.jl?branch=master)
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[![Build Status](https://travis-ci.org/JuliaArrays/AxisArrays.jl.svg?branch=master)](https://travis-ci.org/JuliaArrays/AxisArrays.jl) [![Coverage Status](https://coveralls.io/repos/JuliaArrays/AxisArrays.jl/badge.svg?branch=master)](https://coveralls.io/r/JuliaArrays/AxisArrays.jl?branch=master)
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This package for the Julia language provides an array type (the `AxisArray`) that knows about its dimension names and axis values.
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This allows for indexing with the axis name without incurring any runtime overhead.
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AxisArrays can also be indexed by the values of their axes, allowing column names or interval selections.
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This permits one to implement algorithms that are oblivious to the storage order of the underlying arrays.
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In contrast to similar approaches in [Images.jl](https://github.com/timholy/Images.jl) and [NamedArrays.jl](https://github.com/davidavdav/NamedArrays), this allows for type-stable selection of dimensions and compile-time axis lookup. It is also better suited for regularly sampled axes, like samples over time.
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Collaboration is welcome! This is still a work-in-progress. See [the roadmap](https://github.com/mbauman/AxisArrays.jl/issues/7) for the project's current direction.
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Collaboration is welcome! This is still a work-in-progress. See [the roadmap](https://github.com/JuliaArrays/AxisArrays.jl/issues/7) for the project's current direction.
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## Example of currently-implemented behavior:
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```julia
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julia> Pkg.clone("https://github.com/mbauman/Tuples.jl")
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Pkg.clone("https://github.com/mbauman/RangeArrays.jl")
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Pkg.clone("https://github.com/mbauman/AxisArrays.jl")
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julia> Pkg.clone("https://github.com/JuliaArrays/AxisArrays.jl")
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using AxisArrays, SIUnits
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import SIUnits.ShortUnits: s, ms, µs
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plot(spks, x=:time_sub, y=:data, group=:time_rep, color=DataFrames.RepeatedVector(Ks.assignments, size(spks, 1), 1), Geom.line)
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```
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![clustered spike snippets](doc/spikes.png)
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![clustered spike snippets](docs/spikes.png)
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## Indexing

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