Fixes for 0.7

Author: Adam Brewster

REQUIRE

@@ -1,6 +1,6 @@
 julia 0.6
 BinDeps 0.6.0
 Blosc
-Compat 0.32.0
+Compat 0.61.0
 @osx Homebrew 0.3.1
 @windows WinRPM

deps/build.jl

@@ -1,5 +1,6 @@
 using BinDeps
 using Compat
+using Compat.Libdl
 
 @BinDeps.setup
 

src/HDF5.jl

@@ -15,19 +15,19 @@ struct H5Z_class2_t
     encoder_present::Cuint # Does this filter have an encoder?
     decoder_present::Cuint # Does this filter have a decoder?
     name::Ptr{UInt8} # Comment for debugging
-    can_apply::Ptr{Void} # The "can apply" callback
-    set_local::Ptr{Void} # The "set local" callback
-    filter::Ptr{Void} # The filter callback
+    can_apply::Ptr{Cvoid} # The "can apply" callback
+    set_local::Ptr{Cvoid} # The "set local" callback
+    filter::Ptr{Cvoid} # The filter callback
 end
 
 const FILTER_BLOSC_VERSION = 2
 const FILTER_BLOSC = 32001 # Filter ID registered with the HDF Group for Blosc
 const blosc_name = "blosc"
 
-const blosc_flags_ = Vector{Cuint}(1)
-const blosc_nelements_ = Vector{Csize_t}(1)
-const blosc_values = Vector{Cuint}(8)
-const blosc_chunkdims = Vector{Hsize}(32)
+const blosc_flags_ = Vector{Cuint}(undef,1)
+const blosc_nelements_ = Vector{Csize_t}(undef,1)
+const blosc_values = Vector{Cuint}(undef,8)
+const blosc_chunkdims = Vector{Hsize}(undef,32)
 function blosc_set_local(dcpl::Hid, htype::Hid, space::Hid)
     blosc_nelements_[1] = 8
     if ccall((:H5Pget_filter_by_id2,libhdf5), Herr,
@@ -75,7 +75,7 @@ end
 
 function blosc_filter(flags::Cuint, cd_nelmts::Csize_t,
                       cd_values::Ptr{Cuint}, nbytes::Csize_t,
-                      buf_size::Ptr{Csize_t}, buf::Ptr{Ptr{Void}})
+                      buf_size::Ptr{Csize_t}, buf::Ptr{Ptr{Cvoid}})
     typesize = unsafe_load(cd_values, 3) # The datatype size
     outbuf_size = unsafe_load(cd_values, 4)
     # Compression level:
@@ -122,7 +122,7 @@ function register_blosc()
     c_blosc_set_local = cfunction(blosc_set_local, Herr, Tuple{Hid,Hid,Hid})
     c_blosc_filter = cfunction(blosc_filter, Csize_t,
                                Tuple{Cuint, Csize_t, Ptr{Cuint}, Csize_t,
-                                     Ptr{Csize_t}, Ptr{Ptr{Void}}})
+                                     Ptr{Csize_t}, Ptr{Ptr{Cvoid}}})
     if ccall((:H5Zregister, libhdf5), Herr, (Ref{H5Z_class2_t},),
              H5Z_class2_t(H5Z_CLASS_T_VERS,
                           FILTER_BLOSC,

src/blosc_filter.jl

@@ -9,7 +9,7 @@
 # Types inheriting from DataFile should have names, read, and write
 # methods
 
-@compat abstract type DataFile end
+abstract type DataFile end
 
 import Base: read, write
 
@@ -40,7 +40,7 @@ read(f::Base.Callable, parent::DataFile, name::String...) =
 # Read every variable in the file
 function read(f::DataFile)
     vars = names(f)
-    vals = Vector{Any}(length(vars))
+    vals = Vector{Any}(undef,length(vars))
     for i = 1:length(vars)
         vals[i] = read(f, vars[i])
     end

src/datafile.jl

@@ -1,5 +1,5 @@
 using HDF5
-using Base.Test
+using Compat.Test
 
 @testset "extendtest" begin
 

test/extend_test.jl

@@ -1,5 +1,5 @@
 using HDF5
-using Base.Test
+using Compat.Test
 
 @testset "external" begin
 

test/external.jl

@@ -1,11 +1,12 @@
 using HDF5
-using Base.Test
+using Compat.Test
+import Compat.GC
 
 macro gcvalid(args...)
     Expr(:block, quote
-        gc_enable(true)
-        gc()
-        gc_enable(false)
+        GC.enable(true)
+        GC.gc()
+        GC.enable(false)
     end,
     [:(@test HDF5.isvalid($(esc(x)))) for x in args]...)
 end
@@ -23,7 +24,7 @@ end
 
 @testset "gc" begin
 
-gc_enable(false)
+GC.enable(false)
 fn = tempname()
 for i = 1:10
     file = h5open(fn, "w")
@@ -62,7 +63,7 @@ for i = 1:10
     @gcvalid dt ds d g a
     close(file)
 end
-gc_enable(true)
+GC.enable(true)
 rm(fn)
 
 end # testset gc

test/gc.jl

@@ -1,6 +1,6 @@
 using HDF5
-using Base.Test
 using Compat
+using Compat.Test
 
 @testset "plain" begin
 

test/plain.jl

@@ -1,5 +1,6 @@
 using HDF5
-using Base.Test
+using Compat.Test
+using Compat.LinearAlgebra: norm
 
 @testset "readremote" begin