Merge branch 'master' into jishnub/matrix_structured_zero

Author: dkarrasch

.ci/Manifest.toml

@@ -19,7 +19,7 @@ version = "1.11.0"
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.2.0+0"
+version = "1.3.0+1"
 
 [[deps.Dates]]
 deps = ["Printf"]
@@ -52,7 +52,7 @@ version = "1.11.0"
 
 [[deps.JuliaSyntaxHighlighting]]
 deps = ["StyledStrings"]
-uuid = "dc6e5ff7-fb65-4e79-a425-ec3bc9c03011"
+uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011"
 version = "1.12.0"
 
 [[deps.LazyArtifacts]]
@@ -66,24 +66,24 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
 version = "0.6.4"
 
 [[deps.LibCURL_jll]]
-deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
+deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "8.6.0+0"
+version = "8.11.1+1"
 
 [[deps.LibGit2]]
 deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 version = "1.11.0"
 
 [[deps.LibGit2_jll]]
-deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
+deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"]
 uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
-version = "1.8.0+0"
+version = "1.9.0+0"
 
 [[deps.LibSSH2_jll]]
-deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
+deps = ["Artifacts", "Libdl", "OpenSSL_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.11.0+1"
+version = "1.11.3+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -93,7 +93,7 @@ version = "1.11.0"
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
 path = ".."
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-version = "1.11.0"
+version = "1.12.0"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -104,31 +104,29 @@ deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 version = "1.11.0"
 
-[[deps.MbedTLS_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-version = "2.28.6+1"
-
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-version = "2024.3.11"
+version = "2024.12.31"
 
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
-version = "1.2.0"
+version = "1.3.0"
 
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
-version = "0.3.28+3"
+version = "0.3.29+0"
+
+[[deps.OpenSSL_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
+version = "3.0.15+2"
 
 [[deps.PackageCompiler]]
 deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs", "p7zip_jll"]
-git-tree-sha1 = "946623a388d8cb5874a0e2cb062dbbcfbb90cea5"
-repo-rev = "kc/artifacts"
-repo-url = "https://github.com/JuliaLang/PackageCompiler.jl.git"
+git-tree-sha1 = "5d13e5b70011762b74f86fc08385303589f80272"
 uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d"
-version = "2.1.24"
+version = "2.2.0"
 
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -206,19 +204,19 @@ version = "1.11.0"
 [[deps.Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-version = "1.3.1+1"
+version = "1.3.1+2"
 
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-version = "5.11.2+0"
+version = "5.12.0+0"
 
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.63.0+1"
+version = "1.64.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
-version = "17.5.0+1"
+version = "17.5.0+2"

.ci/create_sysimage.jl

@@ -0,0 +1,16 @@
+using PackageCompiler, Libdl
+
+function create_sysimage_linear_algebra()
+    sysimage = tempname() * "." * Libdl.dlext
+
+    if haskey(ENV, "BUILDKITE")
+        ncores = Sys.CPU_THREADS
+    else
+        ncores = ceil(Int, Sys.CPU_THREADS / 2)
+    end
+
+    withenv("JULIA_IMAGE_THREADS" => ncores) do
+        create_sysimage(["LinearAlgebra", "Test", "Distributed", "Dates", "Printf", "Random"]; sysimage_path=sysimage, incremental=false, filter_stdlibs=true)
+    end
+    return sysimage, ncores
+end

.ci/create_sysimage_and_run_docs.jl

@@ -0,0 +1,6 @@
+include("create_sysimage.jl")
+sysimage, ncores = create_sysimage_linear_algebra()
+doc_file = joinpath(@__DIR__, "..", "docs", "make.jl")
+withenv("JULIA_NUM_THREADS" => 1) do
+    run(`$(Base.julia_cmd()) --sysimage=$sysimage --project=$(dirname(doc_file)) $doc_file`)
+end

.ci/create_sysimage_and_run_tests.jl

@@ -1,17 +1,5 @@
-using PackageCompiler, Libdl
-
-sysimage = tempname() * "." * Libdl.dlext
-
-if haskey(ENV, "BUILDKITE")
-    ncores = Sys.CPU_THREADS
-else
-    ncores = ceil(Int, Sys.CPU_THREADS / 2)
-end
-
-withenv("JULIA_IMAGE_THREADS" => ncores) do
-    create_sysimage(["LinearAlgebra", "Test", "Distributed", "Dates", "Printf", "Random"]; sysimage_path=sysimage, incremental=false, filter_stdlibs=true)
-end
-
+include("create_sysimage.jl")
+sysimage, ncores = create_sysimage_linear_algebra()
 current_dir = @__DIR__
 cmd = """Base.runtests(["LinearAlgebra"]; propagate_project=true, ncores=$ncores)"""
 withenv("JULIA_NUM_THREADS" => 1) do

.github/workflows/ci.yml

@@ -21,9 +21,9 @@ jobs:
           version: 'nightly'
       - name: Generate docs
         run: |
-          julia --project --color=yes -e ''
-          julia --project --color=yes -e 'using Pkg; Pkg.respect_sysimage_versions(false); Pkg.activate("docs"); Pkg.develop(PackageSpec(path = pwd()))'
-          julia --project=docs --color=yes docs/make.jl
+          julia --color=yes --project=.ci -e 'using Pkg; Pkg.instantiate()'
+          julia --color=yes --project=docs -e 'using Pkg; Pkg.instantiate()'
+          julia --color=yes --project=.ci .ci/create_sysimage_and_run_docs.jl
         env:
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

Project.toml

@@ -1,6 +1,6 @@
 name = "LinearAlgebra"
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-version = "1.11.0"
+version = "1.12.0"
 
 [deps]
 Libdl = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

docs/Project.toml

@@ -1,3 +1,6 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+
+[sources]
+LinearAlgebra = {path = ".."}

src/LinearAlgebra.jl

@@ -16,6 +16,7 @@ import Base: USE_BLAS64, abs, acos, acosh, acot, acoth, acsc, acsch, adjoint, as
     permutedims, permuterows!, power_by_squaring, promote_rule, real, sec, sech, setindex!,
     show, similar, sin, sincos, sinh, size, sqrt, strides, stride, tan, tanh, transpose, trunc,
     typed_hcat, vec, view, zero
+import Base: AbstractArray, AbstractMatrix, Array, Matrix
 using Base: IndexLinear, promote_eltype, promote_op, print_matrix,
     @propagate_inbounds, reduce, typed_hvcat, typed_vcat, require_one_based_indexing,
     splat, BitInteger

src/abstractq.jl

@@ -277,6 +277,7 @@ QRPackedQ(factors::AbstractMatrix{T}, τ::AbstractVector{T}) where {T} =
     QRPackedQ{T,typeof(factors),typeof(τ)}(factors, τ)
 QRPackedQ{T}(factors::AbstractMatrix, τ::AbstractVector) where {T} =
     QRPackedQ(convert(AbstractMatrix{T}, factors), convert(AbstractVector{T}, τ))
+QRPackedQ{T}(Q::QRPackedQ) where {T} = QRPackedQ{T}(Q.factors, Q.τ)
 # backwards-compatible constructors (remove with Julia 2.0)
 @deprecate(QRPackedQ{T,S}(factors::AbstractMatrix{T}, τ::AbstractVector{T}) where {T,S},
            QRPackedQ{T,S,typeof(τ)}(factors, τ), false)
@@ -300,12 +301,11 @@ QRCompactWYQ(factors::AbstractMatrix{S}, T::AbstractMatrix{S}) where {S} =
     QRCompactWYQ{S,typeof(factors),typeof(T)}(factors, T)
 QRCompactWYQ{S}(factors::AbstractMatrix, T::AbstractMatrix) where {S} =
     QRCompactWYQ(convert(AbstractMatrix{S}, factors), convert(AbstractMatrix{S}, T))
+QRCompactWYQ{S}(Q::QRCompactWYQ) where {S} = QRCompactWYQ{S}(Q.factors, Q.T)
 # backwards-compatible constructors (remove with Julia 2.0)
 @deprecate(QRCompactWYQ{S,M}(factors::AbstractMatrix{S}, T::AbstractMatrix{S}) where {S,M},
            QRCompactWYQ{S,M,typeof(T)}(factors, T), false)
 
-QRPackedQ{T}(Q::QRPackedQ) where {T} = QRPackedQ(convert(AbstractMatrix{T}, Q.factors), convert(AbstractVector{T}, Q.τ))
-QRCompactWYQ{S}(Q::QRCompactWYQ) where {S} = QRCompactWYQ(convert(AbstractMatrix{S}, Q.factors), convert(AbstractMatrix{S}, Q.T))
 
 # override generic square fallback
 Matrix{T}(Q::Union{QRCompactWYQ{S},QRPackedQ{S}}) where {T,S} =

src/adjtrans.jl

@@ -319,8 +319,8 @@ const AdjointAbsVec{T} = Adjoint{T,<:AbstractVector}
 const AdjointAbsMat{T} = Adjoint{T,<:AbstractMatrix}
 const TransposeAbsVec{T} = Transpose{T,<:AbstractVector}
 const TransposeAbsMat{T} = Transpose{T,<:AbstractMatrix}
-const AdjOrTransAbsVec{T} = AdjOrTrans{T,<:AbstractVector}
-const AdjOrTransAbsMat{T} = AdjOrTrans{T,<:AbstractMatrix}
+const AdjOrTransAbsVec{T,V<:AbstractVector} = AdjOrTrans{T,V}
+const AdjOrTransAbsMat{T,M<:AbstractMatrix} = AdjOrTrans{T,M}
 
 # for internal use below
 wrapperop(_) = identity