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Trying to equal my fork to the upstream
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LICENSE

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Manifest.toml

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Project.toml

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name = "OptimalTransport"
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uuid = "7e02d93a-ae51-4f58-b602-d97af76e3b33"
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authors = ["zsteve <[email protected]>"]
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version = "0.1.9"
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[deps]
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Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
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IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
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LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
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MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
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version = "0.2.0"
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LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
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MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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Requires = "ae029012-a4dd-5104-9daa-d747884805df"
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SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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[compat]
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Distances = "0.9.0, 0.10"
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IterativeSolvers = "0.8.4"
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PyCall = "1.91"
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julia = "1"
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[extras]
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Tulip = "6dd1b50a-3aae-11e9-10b5-ef983d2400fa"
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CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
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Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
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Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
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[targets]
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test = ["Tulip","CUDA", "Random", "Test"]
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FillArrays = "0.9, 0.10"
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IterativeSolvers = "0.8.4, 0.9"
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LazyArrays = "0.18, 0.19"
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test = ["Tulip", "CUDA", "PyCall", "Random", "Test"]
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README.md

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<a href="http://zsteve.phatcode.net/OptimalTransportDocs/">
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<img src="images/optimaltransport_logo2.png" height="125"><br></a>
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## Optimal Transport algorithms for Julia
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<img src="images/optimaltransport_logo.png" height="125"><br></a>
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## Optimal transport algorithms for Julia
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[![](https://img.shields.io/badge/docs-stable-blue.svg)](https://zsteve.github.io/OptimalTransport.jl/stable)
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[![](https://img.shields.io/badge/docs-dev-blue.svg)](https://zsteve.github.io/OptimalTransport.jl/dev)
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## Supported algorithms
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Currently, Earth Mover's Distance (solution to exact Monge-Kantorovich problem) is wrapped via PyCall using the excellent [POT (Python Optimal Transport)](https://pythonot.github.io/) library. The hope is that _gradually_, more and more functionality will be implemented in native Julia.
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However, the following algorithms are offered in pure Julia:
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* Earth-Mover's distance (`emd`, `emd2`)
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* Sinkhorn algorithm (`sinkhorn`, `sinkhorn2`)
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* Log-stabilized Sinkhorn algorithm (`sinkhorn_stabilized`)
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* Epsilon-scaling stabilized Sinkhorn algorithm (`sinkhorn_stabilized_epsscaling`)
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## Documentation
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Read the [documentation](http://zsteve.phatcode.net/OptimalTransportDocs/)
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- [Stable](https://zsteve.github.io/OptimalTransport.jl/stable)
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- [Dev](https://zsteve.github.io/OptimalTransport.jl/dev)
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## Basic usage and examples
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docs/Project.toml

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[deps]
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Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
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[compat]
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Documenter = "0.25"
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PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
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Documenter = "0.25, 0.26"
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PyCall = "1"
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