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Christopher Doris
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Merge remote-tracking branch 'origin/main' into v1
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‎.github/dependabot.yml‎

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# To get started with Dependabot version updates, you'll need to specify which
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# package ecosystems to update and where the package manifests are located.
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# Please see the documentation for all configuration options:
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# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
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version: 2
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updates:
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- package-ecosystem: github-actions
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directory: /
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schedule:
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interval: weekly
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- package-ecosystem: pip
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directory: /
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schedule:
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interval: weekly

‎.github/workflows/CompatHelper.yml‎

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run: which julia
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continue-on-error: true
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- name: Install Julia, but only if it is not already available in the PATH
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uses: julia-actions/setup-julia@v1
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uses: julia-actions/setup-julia@v2
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with:
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version: '1'
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arch: ${{ runner.arch }}

‎.github/workflows/benchmark_pr.yml‎

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name: Benchmark PR
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on:
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pull_request:
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jobs:
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bench:
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runs-on: ubuntu-latest
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steps:
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- uses: MilesCranmer/AirspeedVelocity.jl@action-v1
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with:
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julia-version: "1"
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tune: "true"
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# Post to "summary" tab of workflow run:
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job-summary: "true"
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# Run benchmark using PR's version of the script:
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bench-on: ${{ github.event.pull_request.head.sha }}

‎.github/workflows/docs.yml‎

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name: Documentation
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@v1
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- uses: actions/checkout@v5
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- uses: julia-actions/setup-julia@v2
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with:
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version: '1'
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- run: |
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julia --project=docs -e '
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using Pkg
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Pkg.develop(PackageSpec(path=pwd()))
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Pkg.instantiate()'
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- run: |
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julia --project=docs -e '

‎.github/workflows/docscleanup.yml‎

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runs-on: ubuntu-latest
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steps:
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- name: Checkout gh-pages branch
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uses: actions/checkout@v2
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uses: actions/checkout@v5
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with:
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ref: gh-pages
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‎.github/workflows/register-pypi.yml‎

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register:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v5
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with:
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ref: ${{ inputs.git_ref }}
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- name: Set up Python
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uses: actions/setup-python@v3
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uses: actions/setup-python@v6
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with:
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python-version: "3.10"
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- name: Install build

‎.github/workflows/tests-nightly.yml‎

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jobs:
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tests:
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name: Test (${{ matrix.os }}-${{ matrix.arch }}, julia ${{ matrix.jlversion }})
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name: Test Julia (${{ matrix.jlversion }}, ${{ matrix.os }}-${{ matrix.arch }})
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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os: [ubuntu-latest, windows-latest, macos-latest]
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jlversion: ['~1.9.0-0', 'nightly']
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@v1
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- uses: actions/checkout@v5
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- uses: julia-actions/setup-julia@v2
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with:
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version: ${{ inputs.jl_version }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v1
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- uses: actions/cache@v4
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env:
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cache-name: cache-artifacts
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with:
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JULIA_DEBUG: PythonCall
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JULIA_NUM_THREADS: '2'
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- uses: julia-actions/julia-processcoverage@v1
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- uses: codecov/codecov-action@v1
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- uses: codecov/codecov-action@v5
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with:
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file: lcov.info

‎.github/workflows/tests.yml‎

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jobs:
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julia:
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name: Test (${{ matrix.os }}, julia ${{ matrix.jlversion }})
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name: Test Julia (${{ matrix.jlversion }}, ${{ matrix.os }}, ${{ matrix.pythonexe }})
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: true
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fail-fast: false
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matrix:
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arch: [x64] # x86 unsupported by MicroMamba
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os: [ubuntu-latest, windows-latest, macos-latest]
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jlversion: ['1','1.6']
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jlversion: ['1','1.9']
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pythonexe: ['@CondaPkg']
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include:
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- arch: x64
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os: ubuntu-latest
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jlversion: '1'
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pythonexe: python
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v5
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- name: Set up Julia ${{ matrix.jlversion }}
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uses: julia-actions/setup-julia@v1
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uses: julia-actions/setup-julia@v2
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with:
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version: ${{ matrix.jlversion }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v1
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- uses: julia-actions/cache@v2
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- name: Build package
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uses: julia-actions/julia-buildpkg@v1
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env:
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PYTHON: python
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- name: Run tests
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uses: julia-actions/julia-runtest@v1
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env:
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JULIA_DEBUG: PythonCall
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JULIA_NUM_THREADS: '2'
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PYTHON: python
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JULIA_PYTHONCALL_EXE: ${{ matrix.pythonexe }}
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- name: Process coverage
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uses: julia-actions/julia-processcoverage@v1
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v2
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uses: codecov/codecov-action@v5
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env:
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CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
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python:
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name: Test (${{ matrix.os }}, python ${{ matrix.pyversion }})
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name: Test Python (${{ matrix.pyversion }}, ${{ matrix.os }}, ${{ matrix.juliaexe }})
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: true
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fail-fast: false
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matrix:
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os: [ubuntu-latest, windows-latest, macos-latest]
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pyversion: ["3.x", "3.8"]
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pyversion: ["3", "3.9"]
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juliaexe: ["@JuliaPkg"]
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include:
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- os: ubuntu-latest
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pyversion: 3
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juliaexe: julia
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env:
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MANUAL_TEST_PROJECT: /tmp/juliacall-test-project
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PYTHON_JULIACALL_THREADS: '2'
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PYTHON_JULIACALL_HANDLE_SIGNALS: 'yes'
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v5
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- name: Set up Python ${{ matrix.pyversion }}
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uses: actions/setup-python@v4
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uses: actions/setup-python@v6
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with:
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python-version: ${{ matrix.pyversion }}
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- name: Set up uv
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uses: astral-sh/setup-uv@v6
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with:
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python-version: ${{ matrix.pyversion }}
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- name: Set up Julia
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uses: julia-actions/setup-julia@v1
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id: setup_julia
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uses: julia-actions/setup-julia@v2
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with:
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version: '1'
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- name: Set up test Julia project
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if: ${{ matrix.juliaexe == 'julia' }}
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run: |
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mkdir ${{ env.MANUAL_TEST_PROJECT }}
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julia --project=${{ env.MANUAL_TEST_PROJECT }} -e 'import Pkg; Pkg.develop(path="."); Pkg.instantiate()'
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install flake8 pytest pytest-cov nbval numpy
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cp pysrc/juliacall/juliapkg-dev.json pysrc/juliacall/juliapkg.json
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pip install -e .
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uv sync --dev
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- name: Lint with flake8
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# stop the build if there are Python syntax errors or undefined names
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flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics
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uv run flake8 ./pysrc ./pytest --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics
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# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
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flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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- name: Run tests
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uv run flake8 ./pysrc ./pytest --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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- name: Run tests (with JuliaPkg)
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if: ${{ matrix.juliaexe == '@JuliaPkg' }}
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run: |
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pytest -s --nbval --cov=pysrc ./pytest/
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uv run pytest -s --nbval --cov=pysrc ./pytest/
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- name: Run tests (without JuliaPkg)
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if: ${{ matrix.juliaexe == 'julia' }}
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run: |
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uv run pytest -s --nbval --cov=pysrc ./pytest/
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env:
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PYTHON_JULIACALL_THREADS: '2'
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PYTHON_JULIACALL_EXE: "${{ steps.setup_julia.outputs.julia-bindir }}/julia"
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PYTHON_JULIACALL_PROJECT: ${{ env.MANUAL_TEST_PROJECT }}
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v2
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uses: codecov/codecov-action@v5
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CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

‎.gitignore‎

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dist/
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.CondaPkg/
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/jltest.*
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uv.lock

‎CondaPkg.toml‎

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[deps.libstdcxx]
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version = "<=julia"
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[deps.libstdcxx-ng]
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version = "<=julia"
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[deps.python]
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build = "**cpython**"
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version = ">=3.8,<4"
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version = ">=3.9,<4"

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