Have SymPy depend on SymPyCore; breaking change (#534)

* move SymPyPyCall -> SymPy; breaking change

* rework to avoid extra allocations

* a few more direct Sym calls


* formatting; std lib compat

* PyCall version bump

* add benchmark code

Author: jverzani

.github/ISSUE_TEMPLATE/bug_report.md

@@ -7,6 +7,14 @@ assignees: ''
 
 ---
 
+**Wait**
+
+Most all issues are actually issues with [SymPyCore](https://github.com/jverzani/SymPyCore.jl/issues). If so please report them there.
+
+`SymPy` contains very little code. Basically only that necessary to support the "glue" package `PyCall` to interop `Julia` with `Python`.
+
+
+
 **Describe the bug**
 A clear and concise description of what the bug is.
 

.github/workflows/CompatHelper.yml

@@ -1,7 +1,7 @@
 name: CompatHelper
 on:
   schedule:
-    - cron: '00 00 * * *'
+    - cron: 0 0 * * *
   workflow_dispatch:
 jobs:
   CompatHelper:
@@ -12,5 +12,5 @@ jobs:
       - name: CompatHelper.main()
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}  # optional
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
         run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/TagBot.yml

@@ -4,6 +4,22 @@ on:
     types:
       - created
   workflow_dispatch:
+    inputs:
+      lookback:
+        default: 3
+permissions:
+  actions: read
+  checks: read
+  contents: write
+  deployments: read
+  issues: read
+  discussions: read
+  packages: read
+  pages: read
+  pull-requests: read
+  repository-projects: read
+  security-events: read
+  statuses: read
 jobs:
   TagBot:
     if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
@@ -12,4 +28,4 @@ jobs:
       - uses: JuliaRegistries/TagBot@v1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
-          ssh: ${{ secrets.DOCUMENTER_KEY }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/benchmark_pr.yml

@@ -0,0 +1,78 @@
+name: Benchmark a pull request
+
+on:
+  pull_request_target:
+    branches:
+      - master
+
+permissions:
+  pull-requests: write
+
+jobs:
+    generate_plots:
+        runs-on: ubuntu-latest
+
+        steps:
+            - uses: actions/checkout@v2
+            - uses: julia-actions/setup-julia@v1
+              with:
+                version: "1"
+            - uses: julia-actions/cache@v1
+            - name: Extract Package Name from Project.toml
+              id: extract-package-name
+              run: |
+                PACKAGE_NAME=$(grep "^name" Project.toml | sed 's/^name = "\(.*\)"$/\1/')
+                echo "::set-output name=package_name::$PACKAGE_NAME"
+            - name: Build SymPy
+              env:
+                JULIA_NUM_THREADS: 2
+              run: |
+                # Lightweight build step, as sometimes the runner runs out of memory:
+                julia -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; import Pkg; Pkg.add(;url="https://github.com/JuliaPy/SymPy.jl.git")'
+                julia -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; import Pkg; Pkg.build("SymPy")'
+            - name: Add ~/.julia/bin to PATH
+              run: |
+                echo "$HOME/.julia/bin" >> $GITHUB_PATH
+            - name: Run benchmarks
+              run: |
+                echo $PATH
+                ls -l ~/.julia/bin
+                mkdir results
+                benchpkg ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --url=${{ github.event.repository.clone_url }} --bench-on="${{github.event.pull_request.head.sha}}" --output-dir=results/ --exeflags="-O3 --threads=auto"
+            - name: Create plots from benchmarks
+              run: |
+                mkdir -p plots
+                benchpkgplot ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --npart=10 --format=png --input-dir=results/ --output-dir=plots/
+            - name: Upload plot as artifact
+              uses: actions/upload-artifact@v2
+              with:
+                name: plots
+                path: plots
+            - name: Create markdown table from benchmarks
+              run: |
+                benchpkgtable ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --input-dir=results/ --ratio > table.md
+                echo '### Benchmark Results' > body.md
+                echo '' >> body.md
+                echo '' >> body.md
+                cat table.md >> body.md
+                echo '' >> body.md
+                echo '' >> body.md
+                echo '### Benchmark Plots' >> body.md
+                echo 'A plot of the benchmark results have been uploaded as an artifact to the workflow run for this PR.' >> body.md
+                echo 'Go to "Actions"->"Benchmark a pull request"->[the most recent run]->"Artifacts" (at the bottom).' >> body.md
+
+            - name: Find Comment
+              uses: peter-evans/find-comment@v2
+              id: fcbenchmark
+              with:
+                issue-number: ${{ github.event.pull_request.number }}
+                comment-author: 'github-actions[bot]'
+                body-includes: Benchmark Results
+
+            - name: Comment on PR
+              uses: peter-evans/create-or-update-comment@v3
+              with:
+                comment-id: ${{ steps.fcbenchmark.outputs.comment-id }}
+                issue-number: ${{ github.event.pull_request.number }}
+                body-path: body.md
+                edit-mode: replace

.github/workflows/ci.yml

@@ -1,12 +1,16 @@
 name: CI
 on:
-  pull_request:
-    branches:
-      - master
   push:
     branches:
-      - master
-    tags: '*'
+      - main
+    tags: ['*']
+  pull_request:
+  workflow_dispatch:
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
@@ -15,33 +19,18 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.6' # lowest supported version
-          - '1'   # last released version
+          - '1.6'
+          - '1.9'
         os:
           - ubuntu-latest
-          - macos-latest
-          - windows-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
+      - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
-      - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
-        with:
-          file: lcov.info

.github/workflows/documenter.yml

@@ -1,39 +1,30 @@
 name = "SymPy"
 uuid = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"
-version = "1.2.1"
-
+version = "2.0.0"
 
 [deps]
 CommonEq = "3709ef60-1bee-4518-9f2f-acd86f176c50"
 CommonSolve = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2"
-Latexify = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a"
 PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
 SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
-
-[weakdeps]
-SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
-
-[extensions]
-SymPySymbolicUtilsExt = "SymbolicUtils"
+SymPyCore = "458b697b-88f0-4a86-b56b-78b75cfb3531"
 
 [compat]
-CommonEq = "=0.2.0"
+CommonEq = "0.2.1"
 CommonSolve = "0.2"
-Latexify = "0.15, 0.16"
-LinearAlgebra = "<0.0.1, 1"
-Markdown = "<0.0.1, 1"
-PyCall = "1.91"
-RecipesBase = "0.7, 0.8, 1.0, 1.1"
-SpecialFunctions = "0.8, 0.9, 0.10, 1.0, 2"
+LinearAlgebra = "<0.0.1, 1.6"
+PyCall = "1.96.2"
+SpecialFunctions = "0.7, 0.8, 0.8, 0.10, 1, 2"
 SymbolicUtils = "1"
-julia = "1.0"
+SymPyCore = "0.1.6, 1"
+julia = "1.6"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
 SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
 
 [targets]
-test = ["SymbolicUtils", "Test"]
+test = ["Test", "LinearAlgebra", "SpecialFunctions", "SymbolicUtils"]