Merge pull request #245 from JuliaStats/ast/update_ci

update CI scripts and Documenter.jl

Author: alyst

.github/workflows/CompatHelper.yml

@@ -1,17 +1,20 @@
 name: CompatHelper
-
 on:
   schedule:
-    - cron: '00 00 * * *'
-
+    - cron: 0 0 * * *
+  workflow_dispatch:
+permissions:
+  contents: write
+  pull-requests: write
 jobs:
   CompatHelper:
     runs-on: ubuntu-latest
     steps:
-      - uses: julia-actions/setup-julia@latest
+      - name: Install Julia, but only if it is not already available in the PATH
+        uses: julia-actions/setup-julia@v1
         with:
-          version: 1.3
-      - name: Pkg.add("CompatHelper")
+          version: 1
+      - name: "Install CompatHelper"
         run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
       - name: CompatHelper.main()
         env:

.github/workflows/TagBot.yml

@@ -1,9 +1,17 @@
 name: TagBot
 on:
-  schedule:
-    - cron: 0 * * * *
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+    inputs:
+      lookback:
+        default: 3
+permissions:
+  contents: write
 jobs:
   TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
     runs-on: ubuntu-latest
     steps:
       - uses: JuliaRegistries/TagBot@v1

.github/workflows/ci.yml

@@ -6,10 +6,12 @@ on:
   push:
     branches:
       - master
+      - release-*
+      - runci/*
     tags: '*'
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
     runs-on: ${{ matrix.os }}
     continue-on-error: ${{ matrix.version == 'nightly' }}
     strategy:
@@ -34,41 +36,36 @@ jobs:
             version: '1'
             arch: x64
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
+          show-versioninfo: true
+      - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v3
         with:
           file: lcov.info
   docs:
     name: Documentation
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@v1
         with:
           version: '1'
-      - run: |
+      - uses: julia-actions/cache@v1
+      - name: Install dependencies
+        run: |
           julia --project=doc -e '
             using Pkg
             Pkg.develop(PackageSpec(path=pwd()))
             Pkg.instantiate()'
-      - run: julia --project=doc doc/make.jl
+      - name: Build the manual
+        run: julia --color=yes --project=doc/ doc/make.jl
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

Project.toml

@@ -1,6 +1,6 @@
 name = "Clustering"
 uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
-version = "0.14.3"
+version = "0.14.4"
 
 [deps]
 Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"

doc/Project.toml

@@ -4,4 +4,4 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b"
 
 [compat]
-Documenter = "~0.22"
+Documenter = ">= 0.22"

doc/source/hclust.md

@@ -12,7 +12,8 @@ hclust
 Hclust
 ```
 
-```@example Single-linkage clustering using distance matrix
+Single-linkage clustering using distance matrix:
+```@example
 using Clustering
 D = rand(1000, 1000);
 D += D'; # symmetric distance matrix (optional)

doc/source/kmeans.md

@@ -27,7 +27,7 @@ kmeans!
 
 ## Examples
 
-```@example julia
+```@example
 using Clustering
 
 # make a random dataset with 1000 random 5-dimensional points
@@ -43,7 +43,8 @@ c = counts(R) # get the cluster sizes
 M = R.centers # get the cluster centers
 ```
 
-```@example Scatter plot of the K-means clustering results
+Scatter plot of the K-means clustering results:
+```@example
 using RDatasets, Clustering, Plots
 iris = dataset("datasets", "iris"); # load the data