Problem installing the software

[miguelrgranda]

Hello,

I have found an error when installing the software. I have tried with different devices and I always found the same problem (shown below). I would greatly appreciate any help.

Thanks in advance,

Miguel

miguel@miguel-VirtualBox:~/Desktop/lensingbiases$ sudo python3.6 setup.py install
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "LensingBiases_f" sources
f2py options: []
adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources.
adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs.
adding 'build/src.linux-x86_64-3.6/LensingBiases_f-f2pywrappers2.f90' to sources.
build_src: building npy-pkg config files
running build_py
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'LensingBiases_f' extension
compiling C sources
C compiler: x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/python3.6m -c'
extra options: ''
x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/LensingBiases_fmodule.c
x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c
x86_64-linux-gnu-gcc: error: : No such file or directory
x86_64-linux-gnu-gcc: error: : No such file or directory
error: Command "x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/python3.6m -c build/src.linux-x86_64-3.6/LensingBiases_fmodule.c -o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/LensingBiases_fmodule.o -MMD -MF build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/LensingBiases_fmodule.o.d " failed with exit status 1

[JulienPeloton]

Hi @miguelrgranda

Thanks for reporting. First, note that this package was developed using python 2 (last version tested was 2.7), and I do not guarantee the compatibility with python 3.

Then it looks like a compiler error. What gcc are you using?

[miguelrgranda]

Thanks for the prompt reply.
I tried installing it using Python 2.7.18 and I had the same error. I changed the gcc version to gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 and again I obtained the same error. It is strange because the error says "error: : No such file or directory" but it does not specify the filename which is trying to get.

[JulienPeloton]

Hi @miguelrgranda , have you tried specifying the fortran compiler?

python setup.py build_ext --inplace --fcompiler=gfortran

[miguelrgranda]

Hi @JulienPeloton,

Sorry for the late reply. Yes, I have also tried specifying the fortran compiler. I obtained the same error.