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adding demo project pages
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‎projects/phylo-diffusion/.gitignore‎

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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[cod]
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*$py.class
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# C extensions
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*.so
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# Distribution / packaging
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src/
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.Python
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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share/python-wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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MANIFEST
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.nox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*.cover
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*.py,cover
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.hypothesis/
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.pytest_cache/
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cover/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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db.sqlite3
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db.sqlite3-journal
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# Sphinx documentation
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docs/_build/
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# PyBuilder
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.pybuilder/
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# IPython
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profile_default/
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ipython_config.py
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# pyenv
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# For a library or package, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# .python-version
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# pipenv
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# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
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# having no cross-platform support, pipenv may install dependencies that don't work, or not
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# install all needed dependencies.
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#Pipfile.lock
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# poetry
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# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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#poetry.lock
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# pdm
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# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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#pdm.lock
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# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
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# in version control.
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# https://pdm.fming.dev/#use-with-ide
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.pdm.toml
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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__pypackages__/
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# Celery stuff
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celerybeat-schedule
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celerybeat.pid
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# SageMath parsed files
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*.sage.py
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# Environments
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.env
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.venv
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# Spyder project settings
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.spyderproject
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.spyproject
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# Rope project settings
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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.dmypy.json
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dmypy.json
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# Pyre type checker
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.pyre/
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# pytype static type analyzer
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.pytype/
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# Cython debug symbols
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cython_debug/
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# PyCharm
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# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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# and can be added to the global gitignore or merged into this file. For a more nuclear
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# option (not recommended) you can uncomment the following to ignore the entire idea folder.
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#.idea/

‎projects/phylo-diffusion/README.md‎

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# Phylo-Diffusion Website
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This branch contains the official website code for Phylo-Diffusion

‎projects/phylo-diffusion/css/main.css‎

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:root {
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--secondary-color: #bb0000;
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--nice-gray: rgb(236, 240, 243);
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--main-width: 84ch;
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font-size: 1.0em;
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font-family: "Noto Sans Display", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol";
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}
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html {
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box-sizing: border-box;
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}
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*,*:before,*:after {
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box-sizing: inherit;
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}
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body {
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margin: 0;
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}
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main {
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margin: 0 auto;
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max-width: var(--main-width);
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text-rendering: optimizeLegibility;
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-webkit-font-smoothing: antialiased;
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-moz-osx-font-smoothing: grayscale;
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line-height: 1.7em;
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min-height: calc(var(--main-width));
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}
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h1 {
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text-align: center;
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font-size: 2.8em;
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line-height: 1.2em;
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}
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/***************
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Tables
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***************/
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td,th {
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padding: 4px 8px;
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margin: 0;
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}
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th {
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text-align: center;
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font-size: 0.9em;
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}
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table {
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max-width: 100%;
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display: inline-block;
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overflow-x: scroll;
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white-space: nowrap;
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padding: 0;
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margin: auto;
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}
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th {
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border-top: 2px solid black;
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border-bottom: 1px solid black;
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}
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tbody > tr:last-child > td {
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border-bottom: 2px solid black;
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}
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/* When you hover over a table row, highlight its children table data elements without a rowspan element. */
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tbody > tr:hover {
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background-color: var(--nice-gray);
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}
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th.sticky,td.sticky {
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position: sticky;
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left: 0;
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z-index: 2;
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background: #fff;
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}
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pre.reference {
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-webkit-overflow-scrolling: touch;
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overflow-x: auto;
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padding: 0.5em 0.5em;
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white-space: pre;
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word-wrap: normal;
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line-height: 1.2em;
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background-color: #f5f5f5;
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font-size: 1.1em;
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border-radius: 4px;
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}
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/***************
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Helpers
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***************/
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.no-border-top {
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border-top: 0;
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}
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.no-border-bottom {
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border-bottom: 0;
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}
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.border-right {
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border-right: 1px solid black;
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}
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.text-sm {
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font-size: 0.875rem;
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line-height: 1.25rem;
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}
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.centered {
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text-align: center;
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}
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.full-width {
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width: max(90vw, 100%);
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position: relative;
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left: calc(-45vw + 50%);
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}
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.banded {
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width: 100vw;
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position: relative;
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left: calc(-50vw + 50%);
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padding: 1em;
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text-align: center;
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background-color: var(--nice-gray);
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}
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/***************
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Figures
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***************/
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.figure-container {
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display: grid;
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grid-template-columns: 1fr 1fr;
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column-gap: 4px;
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row-gap: 4px;
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}
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@media only screen and (max-width: 768px) {
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.figure-container {
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grid-template-columns: 1fr;
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}
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}
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figure {
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margin: 0px;
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}
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/* Makes <a> behave like it doesn't exist with regards to flexbox */
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figure > a {
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display: contents;
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}
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figure > a > img,figure > img {
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width: 100%;
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}
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figcaption {
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text-align: left;
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}
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/***************
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Pill Buttons
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***************/
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.pill-button {
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padding: 0.5em 1em;
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border-radius: 9999px;
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background-color: black;
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color: white;
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text-decoration: none;
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margin-right: 0.25em;
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white-space: nowrap;
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}
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.pill-button > span {
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font-size: 1em;
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}
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.pill-button > img {
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height: 1em;
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display: inline-block;
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transform:translate(0, 0.125em);
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}
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/***************
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Dropdown
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***************/
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details {
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margin-top: 6px;
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display: inline-block;
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min-width: 16ch;
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text-align: center;
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padding: 4px 12px;
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position: relative;
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}
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details:hover {
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cursor: pointer;
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}
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details > div.options {
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position: absolute;
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background: white;
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width: 100%;
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box-shadow: rgba(0, 0, 0, 0.1) 0px 1px 3px 0px, rgba(0, 0, 0, 0.06) 0px 1px 2px 0px;
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border-radius: 4px;
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}
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details > div.options > p {
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margin: 0;
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padding: 6px 2px;
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}
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details > div.options > p:hover {
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background-color: var(--nice-gray);
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}

‎projects/phylo-diffusion/images/hier_embed.jpg‎

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‎projects/phylo-diffusion/images/icons/arxiv.svg‎

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‎projects/phylo-diffusion/images/icons/favicon.ico‎

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‎projects/phylo-diffusion/images/icons/github.svg‎

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