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1 parent c216762 commit 03eb547Copy full SHA for 03eb547
.cirro/preprocess.py
@@ -17,11 +17,6 @@
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ds.logger.info("Checking samplesheet parameter")
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ds.logger.info(ds.samplesheet)
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samplesheet = ds.samplesheet
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-
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-# ds.logger.info("Dropping incorrect file path & Merging ds.files w samplesheets")
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-# samplesheet = samplesheet.drop(columns=['file'])
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-# samplesheet2 = samplesheet.merge(ds.files, on='sample', how='left')
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samplesheet.to_csv('samplesheet.csv', index=None)
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ds.add_param("samplesheet", "samplesheet.csv")
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@@ -38,5 +33,3 @@
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ds.add_param('workflow_level', ','.join(workflow_level))
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ds.logger.info(ds.params)
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-##
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