Update modules/local/annotate/main.nf

dltamayo · Copilot · web-flow · commit abefc7497bef · 2026-02-06T10:58:49.000-05:00
Co-authored-by: Copilot &lt;175728472+Copilot@users.noreply.github.com&gt;
diff --git a/modules/local/annotate/main.nf b/modules/local/annotate/main.nf
@@ -11,6 +11,8 @@ process ANNOTATE_CONCATENATE {
     script:
     """
     # Concatenate input Adaptive files and process metadata
+    # Note: 'all_sample_files' is used as an implicit dependency to control scheduling.
+    : $all_sample_files
     compare_concatenate.py "${samplesheet_utf8}"
     """
 }

Original file line number	Diff line number	Diff line change
`@@ -11,6 +11,8 @@ process ANNOTATE_CONCATENATE {`
`11`	`11`	`script:`
`12`	`12`	`"""`
`13`	`13`	`# Concatenate input Adaptive files and process metadata`
	`14`	`+ # Note: 'all_sample_files' is used as an implicit dependency to control scheduling.`
	`15`	`+ : $all_sample_files`
`14`	`16`	`compare_concatenate.py "${samplesheet_utf8}"`
`15`	`17`	`"""`
`16`	`18`	`}`