Merge pull request #70 from break-through-cancer/update-docker

Update docker

Author: dltamayo

.github/workflows/build-push-container.yml

@@ -4,7 +4,10 @@ name: build-push-container
 # Configures this workflow to run every time a change is pushed to the branch called `release`.
 on:
   push:
-    branches: ['main']
+    paths:
+      - '**/Dockerfile'
+      - '**/*.dockerfile'
+      - '.github/workflows/build-push-container.yml'
   workflow_dispatch:
 
 # Defines two custom environment variables for the workflow. These are used for the Container registry domain, and a name for the Docker image that this workflow builds.
@@ -39,6 +42,9 @@ jobs:
         uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
         with:
           images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+          tags: |
+            type=sha,format=short,prefix= # Generates a tag like '860c190'
+            main
       # This step uses the `docker/build-push-action` action to build the image, based on your repository's `Dockerfile`. If the build succeeds, it pushes the image to GitHub Packages.
       # It uses the `context` parameter to define the build's context as the set of files located in the specified path. For more information, see "[Usage](https://github.com/docker/build-push-action#usage)" in the README of the `docker/build-push-action` repository.
       # It uses the `tags` and `labels` parameters to tag and label the image with the output from the "meta" step.

conf/base.config

@@ -9,6 +9,8 @@
 */
 
 process {
+    container = "ghcr.io/karchinlab/tcrtoolkit:main"
+
     // TODO nf-core: Check the defaults for all processes
     cpus   = { check_max( 1    * task.attempt, 'cpus'   ) }
     memory = { check_max( 4.GB * task.attempt, 'memory' ) }

modules/local/compare/compare_concatenate.nf

@@ -1,6 +1,5 @@
 process COMPARE_CONCATENATE {
     label 'process_low'
-    container "ghcr.io/karchinlab/tcrtoolkit:main"
 
     input:
     path samplesheet_utf8