Merge branch 'dev'

Author: kmoad

cravat/admin_util.py

@@ -559,7 +559,7 @@ def __remove_locally_installed_deps(deps: dict) -> None:
         v_string = f"{name}>={version}"
         req = packaging.requirements.Requirement(v_string)
         local_info = get_local_module_info(name)
-        if local_info and local_info.version in req:
+        if local_info and local_info.version in req.specifier:
             to_delete.append(name)
 
     # remove those matches

setup.py

@@ -61,7 +61,7 @@ def readme ():
 setup(
     name='open-cravat',
     packages=['cravat'],
-    version='3.0.0',
+    version='3.1.0',
     description='OpenCRAVAT - variant analysis toolkit',
     long_description=readme(),
     author='Kyle Moad, Kyle Anderson, Charlie Vaske, Jasmine Baker, and Rachel Karchin',
@@ -81,15 +81,15 @@ def readme ():
               },
     install_requires=[
         'looseversion',
-        'packaging',
+        'packaging>=25.0.0',
         'pyyaml',
         'requests',
         'requests-toolbelt',
         'pyliftover',
         'websockets',
         'markdown',
         'aiohttp<4.0.0',
-        'chardet>=3.0.4',
+        'chardet>=3.0.4,<6.0.0',
         'aiosqlite',
         'oyaml',
         'intervaltree',