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README.md
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4. Enumerate all optimal alignments <br>
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`needleman-wunsch --input data/seq1.fasta data/seq2.fasta --all-paths --output reports/all_paths.txt`
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-Lists every equally optimal alignment and writes them to reports/all_paths.txt.
+--> Lists every equally optimal alignment and write the text report to /reports <br>
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5. Export raw DP matrix as CSV <br>
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`needleman-wunsch --input data/seq1.fasta data/seq2.fasta --matrix-out reports/matrix.csv`
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