Need correct rowdata invocation

benjamin-james · benjamin-james · commit 2838da39b187 · 2025-01-29T19:57:06.000-05:00
diff --git a/R/deg.R b/R/deg.R
@@ -197,7 +197,7 @@ deg.prepare <- function(se, pathology, case, control, sample.col, filter_only_ca
         pf <- as.data.frame(as.matrix(Percent))
         colnames(pf) <- paste0("Percent_", colnames(pf))
         for (cn in names(pf)) {
-          rowData(se)[[paste0("Percent", cn)]] <- pf[[cn]]
+          SummarizedExperiment::rowData(se)[[paste0("Percent", cn)]] <- pf[[cn]]
         }
     }
 ### Convert pathology to factor

Original file line number	Diff line number	Diff line change
`@@ -197,7 +197,7 @@ deg.prepare <- function(se, pathology, case, control, sample.col, filter_only_ca`
`197`	`197`	`pf <- as.data.frame(as.matrix(Percent))`
`198`	`198`	`colnames(pf) <- paste0("Percent_", colnames(pf))`
`199`	`199`	`for (cn in names(pf)) {`
`200`		`- rowData(se)[[paste0("Percent", cn)]] <- pf[[cn]]`
	`200`	`+ SummarizedExperiment::rowData(se)[[paste0("Percent", cn)]] <- pf[[cn]]`
`201`	`201`	`}`
`202`	`202`	`}`
`203`	`203`	`### Convert pathology to factor`