umap dimred name

benjamin-james · benjamin-james · commit d53045d1c631 · 2025-08-21T13:01:47.000-04:00
diff --git a/R/sc.R b/R/sc.R
@@ -293,5 +293,5 @@ ad_as_Seurat <- function(h5ad) {
   s.obj = anndataR::read_h5ad(h5ad, to="Seurat")
   obsm = rhdf5::h5read(h5ad, "obsm")
   colnames(obsm$X_umap) <- rhdf5::h5read(h5ad, "/obs/_index")
-  s.obj[["UMAP"]] <- Seurat::CreateDimReducObject(embeddings=t(obsm$X_umap), key="UMAP_", assay="RNA")
+  s.obj[["umap"]] <- Seurat::CreateDimReducObject(embeddings=t(obsm$X_umap), key="UMAP_", assay="RNA")
 }

Original file line number	Diff line number	Diff line change
`@@ -293,5 +293,5 @@ ad_as_Seurat <- function(h5ad) {`
`293`	`293`	`s.obj = anndataR::read_h5ad(h5ad, to="Seurat")`
`294`	`294`	`obsm = rhdf5::h5read(h5ad, "obsm")`
`295`	`295`	`colnames(obsm$X_umap) <- rhdf5::h5read(h5ad, "/obs/_index")`
`296`		`- s.obj[["UMAP"]] <- Seurat::CreateDimReducObject(embeddings=t(obsm$X_umap), key="UMAP_", assay="RNA")`
	`296`	`+ s.obj[["umap"]] <- Seurat::CreateDimReducObject(embeddings=t(obsm$X_umap), key="UMAP_", assay="RNA")`
`297`	`297`	`}`