question about test_env.py

[marya1999]

HI,
when I run test_env.py with my dataset the result is [2, 128, 256]
could you please help me what is the reason?

[KibromBerihu]

Hello @marya1999
The results are the segmentations of the coronal and sagittal PET MIP images and are saved as two channel [2, 128, 256]. You could view these results on the Jupiter notebook in https://github.com/KibromBerihu/ai4elife/blob/main/documentation/tutorial/jupyter_notebook_step_by_step_illustration.ipynb. Look at the Step 7: Visualization of the PET and their segmentation results of the Jupyter notebook. Change the path to your local directory, to the predicted data.

or using other Medical Imaging software:
ITKSNAP: http://www.itksnap.org/pmwiki/pmwiki.php
LIFEx: https://www.lifexsoft.org/
ImageJ ; https://imagej.net/ij/
3D Slicer: https://www.slicer.org/