remove python2 all

Author: KimBioInfoStudio

.github/workflows/main.yml

@@ -4,26 +4,24 @@ on: [push]
 
 jobs:
   build:
-
     runs-on: ubuntu-latest
     strategy:
       max-parallel: 1
       matrix:
-        python-version: [2.7,3.5, 3.6, 3.7]
+        python-version: [3.5, 3.6, 3.7]
 
     steps:
-    - uses: actions/checkout@v1
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v1
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install -r requirements.txt
-    - name: Test with demo file
-      run: |
-        python setup.py install
-        cd demo
-        python ./test.py
-        
+      - uses: actions/checkout@v1
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+      - name: Test with demo file
+        run: |
+          python setup.py install
+          cd test
+          python ./test.py

.travis.yml

@@ -1,24 +1,24 @@
 ## ubuntu xenial need for Python >= 3.7
-dist: xenial 
+dist: xenial
 # Disable sudo to speed up the build
 sudo: false
 
 # Set the build language to Python
 language: python
 
-# Set the python version to 2.7
+# Set the python version to 3.7
 python: 3.7
 
 # Install the codecov pip dependency
 install:
   - pip install -r ./requirements.txt
-  - pip install codecov 
+  - pip install codecov
   - python setup.py install
 
 # Run the unit test
 script:
   - export CODECOV_TOKEN="e00c5f99-4f96-4cae-9bbc-d77668302050"
-  - cd demo
+  - cd test
   - coverage run ./test.py
 
 # Push the results back to codecov

MANIFEST.in

@@ -1,58 +1,59 @@
-### Python Modules for Circos Plot
+# Python Modules for Circos Plot
 
 ![travis-ci](https://www.travis-ci.org/KimBioInfoStudio/PyCircos.svg?branch=develop)
 ![codecov](https://codecov.io/gh/KimBioInfoStudio/PyCircos/branch/develop/graph/badge.svg)
 ![PyPI - Wheel](https://img.shields.io/pypi/wheel/yes.svg)
 ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/python2.svg)
 
-1. Prerequisition
-As official, Pyhton2.7 will not support form 2020-1-1,So we develop a new version support Python3.4+ ,
-We deeply recommand all users using the python version 3.4+ Thx for yr 
-
-- Python 2.7 packages (automatically installed)
-  - numpy >= 1.13.1
-  - pandas >= 0.15.2
-  - matplotlib == 2.0.2 (matplotlib stop support python2.7 form version 2.0 )
-  
-
-- Python 3.4+ packages(automatically installed)
-  
-  - numpy >= 1.13.1
-  - pandas >= 0.15.2
-  - matplotlib >= 2.0.2
-
-
-2. Installation
-  - intall dev branch
-
-    ```
-    git clone https://github.com/KimBioInfoStudio/PyCircos.git
-    cd Pycircos
-    pip install -r requirements.txt
-    python setup.py install [--user]
-    ```
-    or with using 'make'
-    ```
-    make pre-install 
-    make install 
-    make test
-    ```
-    - install release branch
-    ```
-    pip install pycircos
-    ```
-    
-3. Examples
+## 1.Pre Installation
+
+> As official, Pyhton2 will end life form 2020-1-1, So we develop a new version support Python3.5+, We deeply recommand all users using the python version 3.5+, Thx!
+
+### Python 3.5+ packages(automatically installed)
+
+1. numpy
+2. pandas
+3. matplotlib
+
+
+## 2.Installation
+### intall dev branch
+
+1. install from source code 
+
+```
+git clone https://github.com/KimBioInfoStudio/PyCircos.git
+cd PyCircos
+pip install -r requirements.txt
+python3 setup.py install [--user]
+```
+
+2. or install form source code with using 'make'
+
+```
+git clone https://github.com/KimBioInfoStudio/PyCircos.git
+cd PyCircos
+make  
+make install 
+```
 
+3. install release branch
 
 ```
-cd demo
-python run_circos.py run
-display Circos.pdf
+pip install pycircos
 ```
-4. Demo Results 
+    
+## 3. Examples
+### command
 
-![](./demo.png)
+```
+cd ./test/
+python3 test.py
+open ./demo.png
+``` 
+### results
+ 
+![](./test/demo.png)