latest EC product from bioregistry has http nodes and over 200k TrEMBL proteins #444
Description
We are using EC from bioregistry and looks like latest release is using http for node ids:
id category name provided_by synonym deprecated iri same_as
https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1 biolink:OntologyClass Oxidoreductases ec.json https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1
And also add trEMBL annotations … this is a problem because extra data flying in through KGX ontology transform is harder to control and could even be non-trivial to notice. (edited)
11:49
236220 TrEMBL proteins coming in with bioregistry EC — I can make an issue there but first wanted to check that this is somehow expected? (edited)
11:51
(but ideally can avoid to post-process KGX transforms, actually ends up being at two step process I think which may be a new precedent?) (edited)
11:54
For context this is the download:
url: https://w3id.org/biopragmatics/resources/eccode/eccode.json
local_name: ec.json