.gitignore

melanoma/
ModelNet10/
tcells/
logs/
melanoma_data/
melanoma_data_full/
wandb
archive/
playground.py
playground.ipynb
saved_models
DGCNN.py
DGCNN.sh
pointnet_baseline.sh
pointtransformer_baseline.py
pointtransformer_baseline.sh
tcells data/
pdo_data/
COVID_data/
main_covid_kfold.sh
"main_melanoma_kfold copy.sh"
main_melanoma_kfold.sh
main_melanoma.sh
main_pdo_kfold.sh
main_pdo.sh
persistence_models/
persistence_covid.sh
persistence_melanoma.sh
melanoma_pc_persistence.npy
perturb_seq
knn_graphs_with_pe
space-gm
space_gm_preprocessed/
knn_gnn_spacegm.py
knn_gnn.sh
knn_gnn.py
space_gm_preprocess.py
ST_preprocessed
pointnet_baseline.py
main_classification_sigma.sh
main_classification.sh
LICENSE.md
data/**
*.out
*.pyc
.claude
.venv
.pytest_cache
__pycache__