Add sparse matrix and edge case test coverage for random landmarking with precomputed matrices #124
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit Tests | |
| on: | |
| push: | |
| branches-ignore: | |
| - 'test_deploy' | |
| pull_request: | |
| branches: | |
| - '*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| run_tester: | |
| runs-on: ${{ matrix.config.os }} | |
| if: "!contains(github.event.head_commit.message, 'ci skip')" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {name: '3.11', os: ubuntu-latest, python: '3.11' } | |
| - {name: '3.10', os: ubuntu-latest, python: '3.10' } | |
| - {name: '3.9', os: ubuntu-latest, python: '3.9' } | |
| - {name: '3.8', os: ubuntu-latest, python: '3.8' } | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -qq | |
| sudo apt-get install -y libhdf5-dev libhdf5-serial-dev pandoc gfortran libblas-dev liblapack-dev llvm-dev | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.config.python }} | |
| - name: Cache Python packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{runner.os}}-${{ matrix.config.python }}-pip-${{ env.pythonLocation }}-${{ hashFiles('setup.py') }} | |
| restore-keys: ${{runner.os}}-${{ matrix.config.python }}-pip-${{ env.pythonLocation }}- | |
| - name: Install package & dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -U wheel setuptools | |
| pip install -U .[test] | |
| python -c "import graphtools" | |
| - name: Run tests | |
| run: | | |
| pytest | |
| - name: Coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_SERVICE_NAME: github | |
| run: | | |
| coveralls | |
| - name: Upload check results on fail | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.config.name }}_results | |
| path: check |