Removed dtype from anndata

Joao Felipe Rocha · Joao Felipe Rocha · commit 64e61aa68b85 · 2025-08-26T17:55:02.000-04:00
diff --git a/test/test_data.py b/test/test_data.py
@@ -219,7 +219,7 @@ def test_anndata():
     except NameError:
         # not installed
         return
-    G = build_graph(anndata.AnnData(data, dtype=data.dtype))
+    G = build_graph(anndata.AnnData(data))
     assert isinstance(G, graphtools.base.BaseGraph)
     assert isinstance(G.data, np.ndarray)
 
@@ -230,7 +230,7 @@ def test_anndata_sparse():
     except NameError:
         # not installed
         return
-    G = build_graph(anndata.AnnData(sp.csr_matrix(data), dtype=data.dtype))
+    G = build_graph(anndata.AnnData(sp.csr_matrix(data)))
     assert isinstance(G, graphtools.base.BaseGraph)
     assert isinstance(G.data, sp.csr_matrix)
 
diff --git a/test/test_estimator.py b/test/test_estimator.py
@@ -99,7 +99,7 @@ def test_anndata_input():
     E = Estimator(verbose=0)
     E.fit(X.astype(np.float32))
     E2 = Estimator(verbose=0)
-    E2.fit(anndata.AnnData(X, dtype=X.dtype))
+    E2.fit(anndata.AnnData(X))
     np.testing.assert_allclose(
         E.graph.K.toarray(), E2.graph.K.toarray(), rtol=1e-6, atol=2e-7
     )

Original file line number	Diff line number	Diff line change
`@@ -99,7 +99,7 @@ def test_anndata_input():`
`99`	`99`	`E = Estimator(verbose=0)`
`100`	`100`	`E.fit(X.astype(np.float32))`
`101`	`101`	`E2 = Estimator(verbose=0)`
`102`		`- E2.fit(anndata.AnnData(X, dtype=X.dtype))`
	`102`	`+ E2.fit(anndata.AnnData(X))`
`103`	`103`	`np.testing.assert_allclose(`
`104`	`104`	`E.graph.K.toarray(), E2.graph.K.toarray(), rtol=1e-6, atol=2e-7`
`105`	`105`	`)`