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Original file line number Diff line number Diff line change 8484 repository_url : https://test.pypi.org/legacy/
8585 skip_existing : true
8686
87- # - name: Publish to PyPI
88- # if: startsWith(github.ref, 'refs/tags')
89- # uses: pypa/gh-action-pypi-publish@release/v1.5
90- # with:
91- # password: ${{ secrets.PYPI_TOKEN }}
92-
93- - name : Publish to conda
94- run : |
95- wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh -O ~/miniconda.sh
96- bash ~/miniconda.sh -b -p ~/miniconda
97- ~/miniconda/bin/conda install conda-build
98- ~/miniconda/bin/conda config --set anaconda_upload yes
99- ~/miniconda/bin/conda build .conda --token ${{ secrets.CONDA_TOKEN }} --strict-verify
87+ - name : Publish to PyPI
88+ if : startsWith(github.ref, 'refs/tags')
89+ uses : pypa/gh-action-pypi-publish@release/v1.5
90+ with :
91+ password : ${{ secrets.PYPI_TOKEN }}
Original file line number Diff line number Diff line change 1010venv /
1111
1212# build
13- .build *
1413build /
1514dist /
1615fastaparser.egg-info /
Original file line number Diff line number Diff line change 1- .PHONY : help install-dependencies install-testingdependencies test lint coverage docs-test build build-test release clean clean-pyc clean-tests clean-coverage clean-build conda-install-dependencies conda-skeleton cconda-build-and-upload conda- clean-build
1+ .PHONY : help install-dependencies install-testing-dependencies test lint coverage docs-test build build-test release clean clean-pyc clean-tests clean-coverage clean-build
22
33help :
44 @echo " "
1717 @echo " clean-tests removes temp test files and folders"
1818 @echo " clean-coverage removes coverage files"
1919 @echo " clean-build removes packaging artifacts"
20- @echo " "
21- @echo " conda-install-dependencies installs conda build dependencies"
22- @echo " conda-skeleton creates skeleton conda package recipe"
23- @echo " conda-build-and-upload builds conda package and uploads to anaconda cloud"
24- @echo " "
25- @echo " conda-clean-build removes conda build artifacts"
2620
2721install-dependencies :
2822 python -m pip install -r requirements-dev.txt
@@ -72,17 +66,3 @@ clean-build:
7266 rm -rf build/
7367 rm -rf dist/
7468 rm -rf fastaparser.egg-info/
75-
76- conda-install-dependencies :
77- conda install conda-build anaconda-client
78-
79- conda-skeleton :
80- conda skeleton pypi fastaparser --output-dir .conda
81-
82- conda-build-and-upload :
83- conda config --set anaconda_upload yes
84- conda build .conda --strict-verify --output-folder .build_conda
85-
86- conda-clean-build :
87- conda build purge
88- rm -rf .build_conda/
Original file line number Diff line number Diff line change 1010[ ![ pypi] ( https://img.shields.io/pypi/v/fastaparser " pypi package ")] ( https://pypi.org/project/fastaparser )
1111[ ![ pypi downloads] ( https://img.shields.io/pypi/dm/fastaparser " pypi downloads ")] ( https://pypi.org/project/fastaparser )
1212
13- [ ![ anaconda] ( https://anaconda.org/kronopt/fastaparser/badges/version.svg " conda package ")] ( https://anaconda.org/Kronopt/fastaparser )
14- [ ![ anaconda downloads] ( https://img.shields.io/conda/dn/Kronopt/fastaparser " anaconda downloads ")] ( https://anaconda.org/Kronopt/fastaparser )
15-
1613A Python FASTA file Parser and Writer.
1714
1815The FASTA file format is a standard text-based format for representing nucleotide and aminoacid sequences
@@ -22,18 +19,11 @@ It can also handle and manipulate such sequences as well as write sequences to n
2219
2320## Installation
2421
25- At the command line,
26-
27- with ` pip ` :
22+ With ` pip ` :
2823``` sh
2924$ pip install fastaparser
3025```
3126
32- or ` conda ` :
33- ``` sh
34- $ conda install -c kronopt fastaparser
35- ```
36-
3727## Usage
3828
3929### Read FASTA files
Original file line number Diff line number Diff line change 11# History
22
3- ### 1.1.1 (03 -09-2022)
3+ ### 1.1.1 (04 -09-2022)
44* Added support for Python 3.9 and 3.10
55
66### 1.1 (13-02-2020)
Original file line number Diff line number Diff line change 1010[ ![ pypi] ( https://img.shields.io/pypi/v/fastaparser " pypi package ")] ( https://pypi.org/project/fastaparser )
1111[ ![ pypi downloads] ( https://img.shields.io/pypi/dm/fastaparser " pypi downloads ")] ( https://pypi.org/project/fastaparser )
1212
13- [ ![ anaconda] ( https://anaconda.org/kronopt/fastaparser/badges/version.svg " conda package ")] ( https://anaconda.org/Kronopt/fastaparser )
14- [ ![ anaconda downloads] ( https://img.shields.io/conda/dn/Kronopt/fastaparser " anaconda downloads ")] ( https://anaconda.org/Kronopt/fastaparser )
15-
1613A Python FASTA file Parser and Writer.
1714
1815The FASTA file format is a standard text-based format for representing nucleotide and aminoacid sequences
Original file line number Diff line number Diff line change 11# Installation
22
3- At the command line,
4-
5- with ` pip ` :
3+ Using ` pip ` :
64``` sh
75$ pip install fastaparser
86```
9-
10- or ` conda ` :
11-
12- ``` sh
13- $ conda install -c kronopt fastaparser
14- ```
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