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.conda/fastaparser/LICENSE

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.conda/fastaparser/conda_build_config.yaml

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.conda/fastaparser/meta.yaml

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.github/workflows/workflow.yml

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repository_url: https://test.pypi.org/legacy/
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skip_existing: true
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# - name: Publish to PyPI
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# if: startsWith(github.ref, 'refs/tags')
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# uses: pypa/gh-action-pypi-publish@release/v1.5
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# with:
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# password: ${{ secrets.PYPI_TOKEN }}
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- name: Publish to conda
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run: |
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wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh -O ~/miniconda.sh
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bash ~/miniconda.sh -b -p ~/miniconda
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~/miniconda/bin/conda install conda-build
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~/miniconda/bin/conda config --set anaconda_upload yes
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~/miniconda/bin/conda build .conda --token ${{ secrets.CONDA_TOKEN }} --strict-verify
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- name: Publish to PyPI
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if: startsWith(github.ref, 'refs/tags')
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uses: pypa/gh-action-pypi-publish@release/v1.5
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with:
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password: ${{ secrets.PYPI_TOKEN }}

.gitignore

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venv/
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# build
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.build*
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build/
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dist/
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fastaparser.egg-info/

Makefile

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.PHONY: help install-dependencies install-testingdependencies test lint coverage docs-test build build-test release clean clean-pyc clean-tests clean-coverage clean-build conda-install-dependencies conda-skeleton cconda-build-and-upload conda-clean-build
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.PHONY: help install-dependencies install-testing-dependencies test lint coverage docs-test build build-test release clean clean-pyc clean-tests clean-coverage clean-build
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help:
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@echo ""
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@echo "clean-tests removes temp test files and folders"
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@echo "clean-coverage removes coverage files"
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@echo "clean-build removes packaging artifacts"
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@echo ""
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@echo "conda-install-dependencies installs conda build dependencies"
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@echo "conda-skeleton creates skeleton conda package recipe"
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@echo "conda-build-and-upload builds conda package and uploads to anaconda cloud"
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@echo ""
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@echo "conda-clean-build removes conda build artifacts"
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install-dependencies:
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python -m pip install -r requirements-dev.txt
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rm -rf build/
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rm -rf dist/
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rm -rf fastaparser.egg-info/
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conda-install-dependencies:
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conda install conda-build anaconda-client
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conda-skeleton:
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conda skeleton pypi fastaparser --output-dir .conda
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conda-build-and-upload:
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conda config --set anaconda_upload yes
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conda build .conda --strict-verify --output-folder .build_conda
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conda-clean-build:
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conda build purge
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rm -rf .build_conda/

README.md

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[![pypi](https://img.shields.io/pypi/v/fastaparser "pypi package")](https://pypi.org/project/fastaparser)
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[![pypi downloads](https://img.shields.io/pypi/dm/fastaparser "pypi downloads")](https://pypi.org/project/fastaparser)
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[![anaconda](https://anaconda.org/kronopt/fastaparser/badges/version.svg "conda package")](https://anaconda.org/Kronopt/fastaparser)
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[![anaconda downloads](https://img.shields.io/conda/dn/Kronopt/fastaparser "anaconda downloads")](https://anaconda.org/Kronopt/fastaparser)
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A Python FASTA file Parser and Writer.
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The FASTA file format is a standard text-based format for representing nucleotide and aminoacid sequences
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## Installation
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At the command line,
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with `pip`:
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With `pip`:
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```sh
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$ pip install fastaparser
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```
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or `conda`:
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```sh
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$ conda install -c kronopt fastaparser
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```
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## Usage
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### Read FASTA files

docs/history.md

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# History
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### 1.1.1 (03-09-2022)
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### 1.1.1 (04-09-2022)
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* Added support for Python 3.9 and 3.10
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### 1.1 (13-02-2020)

docs/index.md

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[![pypi](https://img.shields.io/pypi/v/fastaparser "pypi package")](https://pypi.org/project/fastaparser)
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[![pypi downloads](https://img.shields.io/pypi/dm/fastaparser "pypi downloads")](https://pypi.org/project/fastaparser)
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[![anaconda](https://anaconda.org/kronopt/fastaparser/badges/version.svg "conda package")](https://anaconda.org/Kronopt/fastaparser)
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[![anaconda downloads](https://img.shields.io/conda/dn/Kronopt/fastaparser "anaconda downloads")](https://anaconda.org/Kronopt/fastaparser)
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A Python FASTA file Parser and Writer.
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The FASTA file format is a standard text-based format for representing nucleotide and aminoacid sequences

docs/installation.md

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# Installation
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At the command line,
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with `pip`:
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Using `pip`:
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```sh
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$ pip install fastaparser
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```
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or `conda`:
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```sh
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$ conda install -c kronopt fastaparser
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```

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