@@ -387,6 +387,8 @@ process LONG_TO_WIDE {
387387 * - publish_filename The name under which the file will be published
388388 *
389389 * @return published_file A path to the published file
390+ *
391+ * @publish ./ File published to the specified directory
390392 */
391393process PUBLISH_RESULT_FILE {
392394 label " r_util"
@@ -416,6 +418,8 @@ process PUBLISH_RESULT_FILE {
416418 *
417419 * @return version The workflow version
418420 * @return version_file Path to the version file
421+ *
422+ * @publish ./ Workflow version information
419423 */
420424process GET_WORKFLOW_VERSION {
421425 label " r_util"
@@ -469,6 +473,7 @@ process ADD_DUMMY_VIDEO {
469473 *
470474 * @param file_path The path to the file that needs validation
471475 * @param pipeline_type The type of pipeline being run (e.g. 'single-mouse', 'single-mouse-corrected-corners', etc.)
476+ *
472477 * @return A boolean indicating if the file is valid and an error message if it's not
473478 */
474479def validateInputFile(String file_path, String pipeline_type) {
@@ -500,6 +505,7 @@ def validateInputFile(String file_path, String pipeline_type) {
500505 *
501506 * @param in_file_list The path to the file that contains the list of intut files
502507 * @param pipeline_type The type of pipeline being run. See validateInputFile for valid types.
508+ *
503509 * @return A list of valid file paths that match the allowed formats for the specified pipeline type.
504510 */
505511def validateInputFilelist(String in_file_list, String pipeline_type) {
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