Config changes to match sumner2 new syntax

Author: SkepticRaven

nextflow/configs/profiles/development.config

@@ -14,7 +14,7 @@ params {
     gait_code_dir = "/gait-analysis/"
     vfi_code_dir = "/vfi/Code/"
     support_code_dir = "/mouse-tracking-runtime/support_code/"
-    heuristic_classifier_folder = "/JABS-postprocess/heuristic_classifiers/"
+    heuristic_classifier_folder = "/opt/JABS-postprocess/src/jabs_postprocess/heuristic_classifiers/"
     filter_processed = false
     model_dir = "${nextflow_resources}/neural-net-models/"
 
@@ -27,15 +27,15 @@ params {
     // Classifiers are described as behavior_name: project_folder
     single_mouse_classifiers = [
         // Missing classifiers did not have artifacts exported on local test
-        "Rearing_supported": [
-            "project_folder_name": "jabs-vivek",
-            "stitch_value": 5,
-            "filter_value": 5,
+        "Rearing (supported)": [
+            classifier_path: "${exported_classifier_folder}Rearing_supported_classifier_v0.37.0.pickle",
+            stitch_value: 5,
+            filter_value: 5,
         ],
-        "Rearing_unsupported": [
-            "project_folder_name": "jabs-vivek",
-            "stitch_value": 5,
-            "filter_value": 5,
+        "Rearing (unsupported)": [
+            classifier_path: "${exported_classifier_folder}Rearing_unsupported_classifier_v0.37.0.pickle",
+            stitch_value: 5,
+            filter_value: 5,
         ],
     ]
     heuristic_classifiers = ["corner", "corner_facing", "freeze", "locomotion", "periphery", "wall_facing"]
@@ -88,21 +88,27 @@ process {
     }
     withLabel: "jabs_postprocess" {
         container = "${nextflow_runtime_containers}/JABS-postprocess/jabs-postprocess/v0.3.1/9dd23535b47d280a4756de6db0dd901059fc7d7211d085a8c23e54593bd49c7d.sif"
+        containerOptions = "-B /media"
     }
     withLabel: "jabs_table_convert" {
         container = "${nextflow_runtime_containers}/mouse-tracking-runtime/RBase/v0.1.2/d9736c87a8d3132bd8e466374dad9bab0813d8a03df2303d26c252160da8c62f.sif"
+        containerOptions = "-B /media"
     }
     withLabel: "gait" {
         container = "${nextflow_runtime_containers}/../vms/gait-pipeline-2025-03-27.sif"
+        containerOptions = "-B /media"
     }
     withLabel: "frailty" {
         container = "${nextflow_runtime_containers}/../vms/vfi-2025-03-27.sif"
+        containerOptions = "-B /media"
     }
     withLabel: "sleap" {
         container = "${nextflow_runtime_containers}/mouse-tracking-runtime/sleap-1.4.1/v0.1.2/fde4ce805487311e10e73600ebae8ad5815bc49d879ecd3fbacb0ad53f39226b.sif"
+        containerOptions = "-B /media"
     }
     withLabel: "sleap_io" {
         container = "${nextflow_runtime_containers}/mouse-tracking-runtime/sleap-io-0.2.0/v0.1.2/c1ab1626c527bc80d79fc0bd9431092dfdb44d947ad88741637907b45439145f.sif"
+        containerOptions = "-B /media"
     }
     withLabel: "globus" {
         container = "${nextflow_runtime_containers}/mouse-tracking-runtime/globus-cli/v0.1.2/e0031a860d0a023ef35d3af6eee13ce5e293cf718cdbae37c09e7696ba3d778d.sif"