Merge pull request #97 from KumarLabJax/bugfix/missing-supportcode-and-incorrect-heuristic-classifier-dir

Multiple fixes related to sumner2 config and docker image

Author: bergsalex

.dockerignore

@@ -5,7 +5,6 @@ docs/
 .nf-test
 mouse-tracking-runtime
 nextflow
-support_code
 vm
 *.h5
 *.sh

Dockerfile

@@ -8,7 +8,7 @@ ENV UV_SYSTEM_PYTHON=1 \
     PYTHONUNBUFFERED=1
 
 # Copy metadata first for layer caching
-COPY pyproject.toml uv.lock* README.md ./
+COPY pyproject.toml uv.lock* README.md support_code ./
 
 # Only install runtime dependencies
 RUN uv sync --frozen --no-group dev --no-group test --no-group lint --no-install-project
@@ -18,4 +18,6 @@ COPY src ./src
 
 RUN uv pip install --system .
 
+COPY support_code ./support_code
+
 CMD ["mouse-tracking-runtime", "--help"]

nextflow/configs/profiles/sumner2.config

@@ -29,8 +29,8 @@ params {
     tracking_code_dir = "/kumar_lab_models/mouse-tracking-runtime/"
     gait_code_dir = "/gait-analysis/"
     vfi_code_dir = "/vfi/Code/"
-    support_code_dir = "/mouse-tracking-runtime/support_code/"
-    heuristic_classifier_folder = "/JABS-postprocess/heuristic_classifiers/"
+    support_code_dir = "/workspace/support_code/"
+    heuristic_classifier_folder = "/opt/JABS-postprocess/src/jabs_postprocess/heuristic_classifiers/"
     filter_processed = false
 
     jabs_version = "v0.37.0"

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "mouse-tracking"
-version = "0.1.2"
+version = "0.1.3"
 description = "Runtime environment for mouse tracking experiments"
 requires-python = ">=3.10,<3.11"
 packages = ["src/mouse_tracking"]