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Move unrelated files out of Nextflow pipeline directory #309

@chasemc

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@chasemc

/Autometa/workflows/ is a Nextflow/nf-core specific directory, the following files should probably find another home. It may confuse future contributors

https://github.com/KwanLab/Autometa/blob/main/workflows/autometa-large-data-mode.sh
https://github.com/KwanLab/Autometa/blob/main/workflows/autometa.sh
https://github.com/KwanLab/Autometa/blob/main/workflows/autometa_flagged.sh

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