changed kegg map publish mode to 'copy'

aw-watson · aw-watson · commit 9b298c7e93d0 · 2025-10-21T22:32:16.000Z
diff --git a/workflows/Nextflow/modules/runAnnotation/runAnnotation.nf b/workflows/Nextflow/modules/runAnnotation/runAnnotation.nf
@@ -161,7 +161,7 @@ process keggPlots {
     )
     publishDir(
         path: "${settings["keggViewerDir"]}"
-        mode: 'symlink'
+        mode: 'copy'
         pattern: "kegg_map/*"
     )
 

Original file line number	Diff line number	Diff line change
`@@ -161,7 +161,7 @@ process keggPlots {`
`161`	`161`	`)`
`162`	`162`	`publishDir(`
`163`	`163`	`path: "${settings["keggViewerDir"]}"`
`164`		`- mode: 'symlink'`
	`164`	`+ mode: 'copy'`
`165`	`165`	`pattern: "kegg_map/*"`
`166`	`166`	`)`
`167`	`167`