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actually add reporting tools to image
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workflows/Nextflow/configs/container.config

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@@ -53,7 +53,7 @@ process {
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container = 'ghcr.io/lanl-bioinformatics/edge_phage_finder:1.2.0'
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}
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withLabel: 'sma' {
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container = 'ghcr.io/lanl-bioinformatics/edge_sma:0.15.0'
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container = 'ghcr.io/lanl-bioinformatics/edge_sma:0.15.1'
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}
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withLabel: 'binning' {
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container = 'ghcr.io/lanl-bioinformatics/edge_binning:1.0.0'

workflows/Nextflow/modules/runAntiSmash/Dockerfile

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# syntax=docker/dockerfile:1
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FROM antismash/standalone-lite:8.0.4
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ENV version=0.15.0
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ENV version=0.15.1
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RUN apt-get update && apt-get install procps -y && apt-get clean
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#we override the base image's entrypoint for appropriate interaction with Nextflow
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ENTRYPOINT ["/usr/bin/env"]

workflows/Nextflow/nextflow.config

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@@ -305,7 +305,7 @@ process {
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container = 'ghcr.io/lanl-bioinformatics/edge_phage_finder:1.2.0'
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}
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withLabel: 'sma' {
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container = 'ghcr.io/lanl-bioinformatics/edge_sma:0.15.0'
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container = 'ghcr.io/lanl-bioinformatics/edge_sma:0.15.1'
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}
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withLabel: 'binning' {
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container = 'ghcr.io/lanl-bioinformatics/edge_binning:1.0.0'

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