syntax fix in annotation workflow publishDir

aw-watson · aw-watson · commit d1175afa0fb7 · 2025-10-30T20:18:28.000Z
diff --git a/workflows/Nextflow/modules/runAnnotation/runAnnotation.nf b/workflows/Nextflow/modules/runAnnotation/runAnnotation.nf
@@ -160,8 +160,8 @@ process keggPlots {
         mode: 'copy'
     )
     publishDir(
-        path: "${settings["keggViewerDir"]}"
-        mode: 'copy'
+        path: "${settings["keggViewerDir"]}",
+        mode: 'copy',
         pattern: "kegg_map/*"
     )
 

Original file line number	Diff line number	Diff line change
`@@ -160,8 +160,8 @@ process keggPlots {`
`160`	`160`	`mode: 'copy'`
`161`	`161`	`)`
`162`	`162`	`publishDir(`
`163`		`- path: "${settings["keggViewerDir"]}"`
`164`		`- mode: 'copy'`
	`163`	`+ path: "${settings["keggViewerDir"]}",`
	`164`	`+ mode: 'copy',`
`165`	`165`	`pattern: "kegg_map/*"`
`166`	`166`	`)`
`167`	`167`