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Merged
exaexa merged 3 commits into from
Sep 2, 2025
Merged

Bump actions/checkout from 4 to 5 #272

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a425a23
Bump actions/checkout from 4 to 5
dependabot[bot] Sep 2, 2025
27ebabc
also unblock symbolics
exaexa Sep 2, 2025
acc9afd
format
exaexa Sep 2, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ jobs:
arch:
- x64
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v5
- uses: julia-actions/setup-julia@v2
with:
version: ${{ matrix.version }}
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2 changes: 1 addition & 1 deletion .github/workflows/docs.yml
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Expand Up @@ -14,7 +14,7 @@ jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v5
- uses: julia-actions/setup-julia@v2
- uses: julia-actions/cache@v2
- name: Install dependencies
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2 changes: 1 addition & 1 deletion .github/workflows/pr-format.yml
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Expand Up @@ -11,7 +11,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Clone the repository
uses: actions/checkout@v4
uses: actions/checkout@v5
- name: Checkout the pull request code # this checks out the actual branch so that one can commit into it
if: github.event_name == 'issue_comment'
env:
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2 changes: 1 addition & 1 deletion Project.toml
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Expand Up @@ -16,7 +16,7 @@ ConstructionBase = "1.3"
DocStringExtensions = "0.8, 0.9"
IfElse = "0.1"
SBML_jll = "5.19.5"
Symbolics = "5"
Symbolics = "5,6"
Unitful = "1"
julia = "1.6"

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1 change: 1 addition & 0 deletions test/loaddynamicmodels.jl
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Expand Up @@ -85,6 +85,7 @@ sbmlfiles = [
@testset "Loading of models from sbml_test_suite" begin
for (sbmlfile, url, hash, converter, expected_par, expected_rxn, expected_u0) in
sbmlfiles

if !isfile(sbmlfile)
Downloads.download(url, sbmlfile)
end
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9 changes: 4 additions & 5 deletions test/loadmodels.jl
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Expand Up @@ -380,11 +380,10 @@ end
@test test_math.args[1].args[2].id == "S1"
@test test_math.args[2].id == "time"

test_math =
readSBML(
joinpath(@__DIR__, "data", "01565-sbml-l3v1.xml"),
libsbml_convert("expandInitialAssignments"),
).reactions["J31"].kinetic_math
test_math = readSBML(
joinpath(@__DIR__, "data", "01565-sbml-l3v1.xml"),
libsbml_convert("expandInitialAssignments"),
).reactions["J31"].kinetic_math

@test test_math.args[2].fn == "sin"
@test test_math.args[2].args[1].val == 2.1
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