major refactoring of the scripts to change the stimulus selection and plot as well as new module for ephys to control both spikeglx and openephys. Work in progress and could see another big update

Author: arpit99ag

ExperPort/Modules/@NeuropixelNeuroblueprint/NeuropixelNeuroblueprint.asv

@@ -31,7 +31,8 @@
         SoloParamHandle(obj, 'stop_after_next_update', 'value', 0);
         SoloParamHandle(obj, 'stopping_process_completed', 'value', 1);
         SoloFunctionAddVars('runrats','func_owner','@runrats','ro_args','stopping_process_completed'); %     This is a bit unpleasant. We give ro access to the flag denoting the stop process as complete to runrats so that runrats can wait on it using a timer. :P
-        SoloFunctionAddVars('OpenEphys_Neuroblueprint','func_owner','@OpenEphys_Neuroblueprint','ro_args','stopping_process_completed'); %     This is a bit unpleasant. We give ro access to the flag denoting the stop process as complete to runrats so that OpenEphys_Neuropblueprint can wait on it using a timer. :P
+        SoloFunctionAddVars('OpenEphys_Neuroblueprint','func_owner','@OpenEphys_Neuroblueprint','ro_args','stopping_process_completed'); %     This is a bit unpleasant. We give ro access to the flag denoting the stop process as complete so that OpenEphys_Neuropblueprint can wait on it using a timer. :P
+        SoloFunctionAddVars('NeuropixelNeuroblueprint','func_owner','@NeuropixelNeuroblueprint','ro_args','stopping_process_completed'); %     This is a bit unpleasant. We give ro access to the flag denoting the stop process as complete so that NeuropixelNeuropblueprint can wait on it using a timer. :P
         SoloFunctionAddVars('TowerWaterDelivery','func_owner','@TowerWaterDelivery','ro_args','stopping_process_completed'); %     This is a bit unpleasant. We give ro access to the flag denoting the stop process as complete to runrats so that runrats can wait on it using a timer. :P
 
         set(get_ghandle(RunButton), 'FontSize', 20); % (defined by GetSoloFunctionArgs)
@@ -287,6 +288,9 @@
                     elseif OpenEphys_Neuroblueprint('is_running')
                         OpenEphys_Neuroblueprint('crash_detected');
                         Running.value = 0;
+                    elseif NeuropixelNeuroblueprint('is_running')
+                        NeuropixelNeuroblueprint('crash_detected');
+                        Running.value = 0;    
                     else
                         rethrow(me);
                     end

ExperPort/Modules/@NeuropixelNeuroblueprint/NeuropixelNeuroblueprint.m

@@ -45,14 +45,15 @@
         display('test');
         %If we are starting from a forced reboot from runrats itself we
         %need to make sure the do_on_reboot.bat file is set back to nothing
-        try %#ok<TRYNC>
-            p = pwd;
-            cd('\ratter\Rigscripts')
-
-            !del do_on_reboot.bat
-            !copy nothing.bat do_on_reboot.bat /Y
-            cd(p);
-        end
+        
+        % try %#ok<TRYNC>
+        %     p = pwd;
+        %     cd('\ratter\Rigscripts')
+        % 
+        %     !del do_on_reboot.bat
+        %     !copy nothing.bat do_on_reboot.bat /Y
+        %     cd(p);
+        % end
 
         %If a dispatcher is already open, let's close it so we don't ever have
         %more than 1
@@ -115,7 +116,7 @@
         SoloParamHandle(obj,'myfig', 'value',fig);
 
         try
-            set(myfig, 'WindowStyle', 'modal');
+            set(value(myfig), 'WindowStyle', 'modal');
             pause(0.1);
 
         catch %#ok<CTCH>

ExperPort/Modules/@OpenEphys_Neuroblueprint/OpenEphys_Neuroblueprint.m

@@ -205,7 +205,7 @@
     % PokesPlotSection(obj, 'close');
 	SideSection(obj, 'close');
     StimulusSection(obj,'close');
-     BonsaiCameraInterface(obj,'close');
+    BonsaiCameraInterface(obj,'close');
     if exist('myfig', 'var') && isa(myfig, 'SoloParamHandle') && ishandle(value(myfig)) %#ok<NODEF>
       delete(value(myfig));
     end

ExperPort/Modules/@dispatcher/RunningSection.m

@@ -219,7 +219,7 @@
 
         SoloFunctionAddVars('StimulusSection', 'ro_args', ...
 			{'ThisTrial';'stimuli_on';'A1_time';'time_bet_aud1_gocue' ; ...
-			'PreStim_time'});
+			'PreStim_time';'LeftProb'});
 
         SoloFunctionAddVars('StimulatorSection', 'ro_args', ...
 			{'A1_time';'time_bet_aud1_gocue';'time_go_cue'; ...

ExperPort/Modules/@runrats/runrats.m

@@ -134,6 +134,10 @@
 
       end
 
+      if strcmpi(value(StimLine),'Ephys') & n_done_trials == 0
+            dispatcher('set_trialnum_indicator_flag');
+      end
+      
 
 
 %% prepare_next_trial