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Commit b77fc15

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RubenVerborghRubenVerborgh
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Add complex federated queries.
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‎queries/fedbench/C1.sparql

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SELECT DISTINCT ?drug ?enzyme ?reaction Where {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antibiotics> .
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?drug2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antiviralAgents> .
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?drug3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antihypertensiveAgents> .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug1 .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug2 .
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?I2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug3 .
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?I3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?drug <http://www.w3.org/2002/07/owl#sameAs> ?drug5 .
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?drug5 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://dbpedia.org/ontology/Drug> .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/keggCompoundId> ?cpd .
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?enzyme <http://bio2rdf.org/ns/kegg#xSubstrate> ?cpd .
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?enzyme <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://bio2rdf.org/ns/kegg#Enzyme> .
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?reaction <http://bio2rdf.org/ns/kegg#xEnzyme> ?enzyme .
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?reaction <http://bio2rdf.org/ns/kegg#equation> ?equation .
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}

‎queries/fedbench/C10.sparql

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SELECT ?title ?actor ?news ?director ?film ?n ?genre WHERE {
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?film <http://purl.org/dc/terms/title> 'Tarzan' .
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?film <http://data.linkedmdb.org/resource/movie/actor> ?actor .
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?film <http://data.linkedmdb.org/resource/movie/production_company> <http://data.linkedmdb.org/resource/production_company/15> .
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?actor <http://www.w3.org/2002/07/owl#sameAs> ?x .
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OPTIONAL{
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?x <http://dbpedia.org/ontology/director> ?director .
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?director <http://dbpedia.org/ontology/nationality> ?n .
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?film <http://data.linkedmdb.org/resource/movie/genre> ?genre .
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OPTIONAL {
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?y <http://www.w3.org/2002/07/owl#sameAs> ?x.
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} .
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?y <http://data.nytimes.com/elements/topicPage> ?news
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} .
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}

‎queries/fedbench/C2.sparql

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SELECT DISTINCT ?drug ?drug1 ?drug2 ?drug3 ?drug4 WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antibiotics> .
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?drug2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antiviralAgents> .
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?drug3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antihypertensiveAgents> .
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?drug4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/anti-bacterialAgents> .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug1 .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug2 .
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?I2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug3 .
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?I3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug4 .
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?I4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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}

‎queries/fedbench/C3.sparql

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SELECT DISTINCT ?drug ?enzyme ?reaction WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/302> .
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?drug2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/53> .
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?drug3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/59> .
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?drug4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/105> .
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> ?d .
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?drug2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> ?d .
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?drug3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> ?d .
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?drug4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> ?d .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> ?d .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/casRegistryNumber> ?id .
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?keggDrug <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://bio2rdf.org/ns/kegg#Drug> .
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?keggDrug <http://bio2rdf.org/ns/bio2rdf#xRef> ?id .
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?keggDrug <http://purl.org/dc/elements/1.1/title> ?title .
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}

‎queries/fedbench/C4.sparql

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SELECT DISTINCT ?d ?drug5 ?cpd ?enzyme ?equation
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WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/261> .
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr.
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o.
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?drug <http://www.w3.org/2002/07/owl#sameAs> ?drug5 .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> ?d1 .
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?drug <http://www.w3.org/2002/07/owl#sameAs> ?drug5 .
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?drug5 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://dbpedia.org/ontology/Drug> .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/keggCompoundId> ?cpd .
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?enzyme <http://bio2rdf.org/ns/kegg#xSubstrate> ?cpd .
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?enzyme <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://bio2rdf.org/ns/kegg#Enzyme> .
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?reaction <http://bio2rdf.org/ns/kegg#xEnzyme> ?enzyme .
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?reaction <http://bio2rdf.org/ns/kegg#equation> ?equation .
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}

‎queries/fedbench/C5.sparql

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SELECT DISTINCT ?drug5 ?drug6
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WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/319> .
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/270> .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug1 .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug .
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?drug1 <http://www.w3.org/2002/07/owl#sameAs> ?drug5 .
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?drug <http://www.w3.org/2002/07/owl#sameAs> ?drug6 .
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}

‎queries/fedbench/C6.sparql

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SELECT DISTINCT ?drug
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WHERE
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{
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/micronutrient> .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/dietarySupplement> .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/non-essentialAminoAcids> .
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OPTIONAL {
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?drug<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/indication>?i .
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?drug<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/biotransformation>?b .
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?drug<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/inchiKey>?k .
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?drug<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/synonym>?s .
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?drug<http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/toxicity>?t .
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} .
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OPTIONAL {
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/keggCompoundId>?cpd.
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?enzyme <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://bio2rdf.org/ns/kegg#Enzyme>.
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?enzyme <http://bio2rdf.org/ns/kegg#xSubstrate> ?cpd.
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?reaction <http://bio2rdf.org/ns/kegg#xEnzyme>?enzyme.
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?reaction <http://bio2rdf.org/ns/kegg#equation>?equation .
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} .
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OPTIONAL {
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?drug5 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://dbpedia.org/ontology/Drug> .
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?drug <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://dbpedia.org/ontology/Drug>
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}
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}

‎queries/fedbench/C7.sparql

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SELECT DISTINCT ?d ?drug5 ?cpd ?enzyme ?equation
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WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/261> .
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps .
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o .
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OPTIONAL {
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?drug <http://www.w3.org/2002/07/owl#sameAs> ?drug5 .
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?drug5 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://dbpedia.org/ontology/Drug> .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/keggCompoundId> ?cpd .
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?enzyme <http://bio2rdf.org/ns/kegg#xSubstrate> ?cpd .
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?enzyme <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://bio2rdf.org/ns/kegg#Enzyme> .
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?reaction <http://bio2rdf.org/ns/kegg#xEnzyme> ?enzyme .
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?reaction <http://bio2rdf.org/ns/kegg#equation> ?equation .
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}
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}

‎queries/fedbench/C8.sparql

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SELECT DISTINCT ?drug1
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WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/673> .
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps.
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?o <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr.
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o.
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/synonym>?o1 .
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OPTIONAL {
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?drug <http://www.w3.org/2002/07/owl#sameAs> ?drug5 .
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?drug5 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://dbpedia.org/ontology/Drug> .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/keggCompoundId> ?cpd .
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?enzyme <http://bio2rdf.org/ns/kegg#xSubstrate> ?cpd .
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?enzyme <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://bio2rdf.org/ns/kegg#Enzyme> .
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?reaction <http://bio2rdf.org/ns/kegg#xEnzyme> ?enzyme .
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?reaction <http://bio2rdf.org/ns/kegg#equation> ?equation .
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}
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}

‎queries/fedbench/C9.sparql

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SELECT DISTINCT ?drug ?drug1 ?drug2 ?drug3 ?drug4 ?d1 WHERE {
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antibiotics> .
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?drug2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antiviralAgents> .
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?drug3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/antihypertensiveAgents> .
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?drug4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugcategory/anti-bacterialAgents> .
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?drug1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps1 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr1 .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o1 .
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?drug2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o2 .
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?o1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g2 .
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?o2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l2 .
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?o2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw2 .
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?o2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp2 .
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?o2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn2 .
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?o2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps2 .
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?o2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr2 .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o2 .
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?drug3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps3 .
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?o3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr3 .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o3 .
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?drug4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target> ?o4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/genbankIdGene> ?g4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/locus> ?l4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/molecularWeight> ?mw4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/hprdId> ?hp4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/swissprotName> ?sn4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/proteinSequence> ?ps4 .
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?o4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/generalReference> ?gr4 .
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?drug <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/target>?o4 .
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OPTIONAL{
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug1 .
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?I1 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug2 .
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?I2 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug3 .
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?I3 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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?I4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug2> ?drug4 .
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?I4 <http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/interactionDrug1> ?drug .
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}
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}

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