NGCHM-R/.github/workflows/pkgdown.yaml at main · MD-Anderson-Bioinformatics/NGCHM-R · GitHub

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on:
  release:
    types: [published]
  workflow_dispatch:

name: Build documentation website

##
## This job:
##   - re-renders the index.md file from index.Rmd,
##   - builds pgkdown website
##   - deploys pgkdown website
##
jobs:
  build-pkgdown-site:
    runs-on: macOS-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      JAVA_VERSION: 11
    steps:
      - uses: actions/checkout@v3

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          extra-repositories: "https://md-anderson-bioinformatics.r-universe.dev"

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::pkgdown, local::.
          needs: website

      - name: Set up JDK for java ${{ env.JAVA_VERSION }}
        uses: actions/setup-java@v3
        with:
          java-version: "${{ env.JAVA_VERSION }}"
          distribution: 'temurin'

      - name: Render index.Rmd (landing page for website)
        run: Rscript -e 'rmarkdown::render("index.Rmd", "md_document"); print(sessionInfo())'

      - name: Deploy package
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'