add icons and reorder pages on sidebar

Author: namiroues

_config.yml

@@ -9,7 +9,7 @@ permalink:        pretty
 title:            MDAnalysis
 name:             MDAnalysis
 tagline:          molecular simulations data analysis
-description:      working with data in the molecular sciences
+description:      working with data in molecular sciences
 # long_description is not currently used by the theme
 long_description: |
                   MDAnalysis is a Python library which enables the handling and
@@ -40,8 +40,8 @@ plugins:
   - jekyll-feed
 
 # Blog pagination
-paginate_path:   "/blog/page:num/"
-paginate:        3
+paginate_path:   "/pages/blog/page:num/"
+paginate:        12
 
 # jekyll-feed
 # - our previous feed was called atom.xml so we use it instead

_includes/head.html

@@ -39,4 +39,8 @@
      anchors.add('h1, h2, h3, h4, h5, h6');
      });
   </script>
+
+  <!-- FontAwesome Icons -->
+  <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/all.min.css">
+
 </head>

_includes/sidebar.html

@@ -9,8 +9,29 @@ <h1>
       <p class="lead">{{ site.description }}</p>
     </div>
 
-    <div id="docsearch">Enable javascript for search.</div>
-
+    <!-- Social Media Icons -->
+    <div class="sidebar-social-icons">
+      <a href="https://www.linkedin.com/company/mdanalysis/" target="_blank" title="LinkedIn">
+        <i class="fab fa-linkedin"></i>
+      </a>
+      <a href="https://bsky.app/profile/mdanalysis.bsky.social" target="_blank" title="Bluesky">
+        <img src="{{ site.baseurl }}/public/images/bluesky.svg" width="24" height="24" alt="Bluesky">
+      </a>
+      <a href="https://discord.com/invite/fXTSfDJyxE" target="_blank" title="Discord">
+        <i class="fab fa-discord"></i>
+      </a>
+      <a href="https://github.com/MDAnalysis/mdanalysis" target="_blank" title="GitHub">
+        <i class="fab fa-github"></i>
+      </a>
+    </div>
+    
+    <!-- Search Bar -->
+    <div class="sidebar-search">
+      <div class="sidebar-search-box">
+        <div id="docsearch">Enable javascript for search.</div>
+      </div>
+    </div>
+    
     <nav class="sidebar-nav">
       {% assign site_base_url = site.baseurl | append: "/" %}
       <a class="sidebar-nav-item{% if page.url == site_base_url %} active{% endif %}" href="{{ site.baseurl }}/">Home</a>
@@ -24,21 +45,15 @@ <h1>
       {% assign blogpagedir_len = blogpagedir | size %}
       {% assign pages_list = site.pages | sort: "order" %}
       {% for node in pages_list %}
-        {% if node.title != null %}
-          {% if node.layout == "page" %}
-            {% assign prefix = node.url | truncate: blogpagedir_len, '' %}
+      {% if node.title != null%}
+        {% if node.layout == "page"%}
+	  {% assign prefix = node.url | truncate: blogpagedir_len, '' %}
             {% if prefix != blogpagedir %}
               <a class="sidebar-nav-item{% if page.url == node.url %} active{% endif %}" href="{{ node.url }}">{{ node.title }}</a>
             {% endif %}
           {% endif %}
         {% endif %}
       {% endfor %}
-
-      <a class="sidebar-nav-item" href="{{ site.docs.userguide.url }}">User Guide</a>	      
-      <a class="sidebar-nav-item" href="{{ site.docs.mdanalysis.url }}">Docs</a>
-      <a class="sidebar-nav-item" href="{{ site.pypi.package }}">Download</a>
-      <a class="sidebar-nav-item" href="{{ site.github.repo }}">GitHub project</a>
-      <a class="sidebar-nav-item" href="{{ site.twitter.url }}">@{{ site.twitter.name }}</a>
     </nav>
 
     <p>&copy; {{ site.time | date: '%Y' }}. All rights reserved.</p>

_posts/2022-11-07-relicensing.md

@@ -203,4 +203,4 @@ fiscal sponsor, [NumFOCUS][].
 [contributors]: https://github.com/MDAnalysis/mdanalysis/blob/develop/package/AUTHORS
 [faq wiki]: https://github.com/MDAnalysis/mdanalysis/wiki/GPLv2--to-LGPLv3--relicensing-summary-and-FAQ
 [NumFOCUS]: https://www.numfocus.org
-[Core Developers]: {% link about.md %}#mdanalysis-core-developers
+[Core Developers]: {% link pages/about.md %}#mdanalysis-core-developers

_posts/2023-09-22-licensing-update.md

@@ -324,4 +324,4 @@ an advised fund of Silicon Valley Community Foundation (funder DOI 10.13039/1000
 [consultation]:  {{ site.baseurl }}{% post_url 2022-11-07-relicensing %}#consultation-period-7th-november-until-5th-december-2022
 [release 2.6]: {{ site.baseurl }}{% post_url 2023-09-02-release-2.6.1 %}
 [release 2.5]: {{ site.baseurl }}{% post_url 2023-06-05-releases-2.4.x-2.5.0 %}
-[Core Developers]: {% link about.md %}#mdanalysis-core-developers
+[Core Developers]: {% link pages/about.md %}#mdanalysis-core-developers

_posts/2023-10-25-towards_3.0.md

@@ -64,7 +64,7 @@ If you have any feedback on this roadmap or would like to discuss our future pla
 
 – Hugo MacDermott-Opeskin on behalf of the MDAnalysis [Core Developers][]
 
-[Core Developers]: {{ site.baseurl }}{% link about.md %}#mdanalysis-core-developers
+[Core Developers]: {{ site.baseurl }}{% link pages/about.md %}#mdanalysis-core-developers
 [Discord]: {{ site.discord.url }}
 [distopia]: https://github.com/MDAnalysis/distopia
 [EOSS4]: {{ site.baseurl }}{% post_url 2021-08-31-CZI-EOSS4 %}