44
55|build | |cov | [*]_
66
7- |docs | |devdocs | |usergroup | |developergroup |
7+ |docs | |devdocs | |usergroup | |developergroup | | anaconda |
88
99MDAnalysis _ is a Python toolkit to analyze molecular dynamics
1010trajectories generated by a wide range of popular simulation packages
@@ -14,18 +14,18 @@ lists of supported `trajectory formats`_ and `topology formats`_.)
1414.. code :: python
1515
1616 import MDAnalysis as mda
17-
17+
1818 # Load simulation results with a single line
1919 u = mda.Universe(' topol.tpr' ,' traj.trr' )
20-
20+
2121 # Select atoms
2222 ag = u.select_atoms(' name OH' )
23-
23+
2424 # Atom data made available as Numpy arrays
2525 ag.positions
2626 ag.velocities
2727 ag.forces
28-
28+
2929 # Iterate through trajectories
3030 for ts in u.trajectory:
3131 print (ag.center_of_mass())
@@ -61,7 +61,7 @@ MDAnalysis issue tracker.)
6161
6262.. Footnotes
6363
64- .. [* ] **build **: Unit testing is for the whole package; **coverage ** is shown for the core library
64+ .. [* ] **build **: Unit testing is for the whole package; **coverage ** is shown for the core library
6565 modules (which excludes `MDAnalysis.analysis `_ and `MDAnalysis.visualization `_ at
6666 the moment). For more details and discussion see issue `#286 `_.
6767
@@ -77,11 +77,11 @@ MDAnalysis issue tracker.)
7777.. |usergroup | image :: https://img.shields.io/badge/Google%20Group-Users-lightgrey.svg
7878 :alt: User Google Group
7979 :target: http://users.mdanalysis.org
80-
80+
8181.. |developergroup | image :: https://img.shields.io/badge/Google%20Group-Developers-lightgrey.svg
8282 :alt: Developer Google Group
8383 :target: http://developers.mdanalysis.org
84-
84+
8585.. |docs | image :: https://img.shields.io/badge/docs-latest-brightgreen.svg
8686 :alt: Documentation (latest release)
8787 :target: http://docs.mdanalysis.org
@@ -93,7 +93,11 @@ MDAnalysis issue tracker.)
9393.. |build | image :: https://travis-ci.org/MDAnalysis/mdanalysis.svg?branch=develop
9494 :alt: Build Status
9595 :target: https://travis-ci.org/MDAnalysis/mdanalysis
96-
96+
9797.. |cov | image :: https://coveralls.io/repos/MDAnalysis/mdanalysis/badge.svg?branch=develop
9898 :alt: Coverage Status
9999 :target: https://coveralls.io/r/MDAnalysis/mdanalysis?branch=develop
100+
101+ .. |anaconda | image :: https://anaconda.org/mdanalysis/mdanalysis/badges/version.svg
102+ :alt: Anaconda
103+ :target: https://anaconda.org/MDAnalysis/mdanalysis
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