@@ -15,11 +15,18 @@ The rules for this file:
1515
1616-------------------------------------------------------------------------------
1717??/??/?? IAlibay, orbeckst, marinegor, tylerjereddy, ljwoods2, marinegor,
18- spyke7, talagayev, tanii1125, BradyAJohnston, hejamu, jeremyleung521
18+ spyke7, talagayev, tanii1125, BradyAJohnston, hejamu, jeremyleung521,
19+ harshitgajjela-droid, kunjsinha, aygarwal, jauy123
1920
2021 * 2.11.0
2122
2223Fixes
24+ * Improved performance of inverse index mapping in AtomGroup using an optimized
25+ Cython implementation in lib._cutils.inverse_int_index()
26+ (Issue #3387, PR #5252)
27+ * Fixes TypeError with np.int64 indexing in GSD Reader (Issue #5224)
28+ * Fixed bug in add_transformations allowing non-callable transformations
29+ (Issue #2558, PR #2558)
2330 * Drop/Replace lock file test in test_xdr (Issue #5236, PR #5237)
2431 * HydrogenBondAnalysis: Fixed `count_by_time()` when using `run(FrameIterator)` that
2532 results in `self.start` and `self.end` being None (Issue #5200, PR #5202)
@@ -38,13 +45,15 @@ Fixes
3845 DSSP by porting upstream PyDSSP 0.9.1 fix (Issue #4913)
3946
4047Enhancements
48+ * Reduces duplication of code in _apply() function (Issue #5247, PR #5294)
49+ * Added new top-level `MDAnalysis.fetch` module (PR #4943)
50+ * Added new function `MDAnalysis.fetch.from_PDB` to download structure files from wwPDB
51+ using `pooch` as optional dependency (Issue #4907, PR #4943)
52+ * Added benchmarks for package.MDAnalysis.analysis.msd.EinsteinMSD (PR #5277)
4153 * Improved performance of `AtomGroup.wrap()` with compounds (PR #5220)
4254 * Adds support for parsing `.tpr` files produced by GROMACS 2026.0
4355 * Enables parallelization for analysis.diffusionmap.DistanceMatrix
4456 (Issue #4679, PR #4745)
45- * Improve performance of inverse index mapping in AtomGroup by
46- replacing O(n^2) logic with optimized Cython implementation.
47- (Issue #3387, PR #5252)
4857
4958Changes
5059 * The msd.py inside analysis is changed, and ProgressBar is implemented inside
@@ -3615,4 +3624,4 @@ Testsuite
36153624 licenses
36163625
3617362611/12/07 naveen
3618- * prepared for release outside lab
3627+ * prepared for release outside lab
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