Merge pull request #557 from MESAHub/rf/ion

Resurect the ionization module

Author: evbauer

CODEOWNERS

@@ -18,6 +18,7 @@ gyre/ @rhdtownsend @warrickball
 hdfio5 @rhdtownsend
 interp_1d/ @rhdtownsend 
 interp_2d/ @rhdtownsend 
+ionization/ @fxt44
 kap/ @fxt44 @Debraheem
 linters/ 
 turb/ 

clean

@@ -13,6 +13,7 @@ echo "removing some data to force reinstall"
 rm -rf data/atm_data
 rm -rf data/eosDT_data
 rm -rf data/kap_data
+rm -rf data/ionization_data
 rm -rf data/chem_data
 rm -rf data/colors_data
 rm -rf data/rates_data/cache

each_package_do

@@ -24,6 +24,7 @@ do_one eos
 do_one gyre
 do_one interp_1d
 do_one interp_2d
+do_one ionization
 do_one kap
 do_one math
 do_one mtx

empty_caches

@@ -1,6 +1,7 @@
 #!/bin/bash
 
 rm -f data/eos*_data/cache/*
+rm -f data/ionization_data/cache/*
 rm -f data/kap_data/cache/*
 rm -f data/rates_data/cache/*
 rm -f eos/data/eos_data/cache/*

install

@@ -354,6 +354,12 @@ do_one_parallel net
 do_one star_data
 do_one turb
 
+if [ ! -r data/ionization_data ]
+then
+	do_input_data ionization
+fi
+do_one_parallel ionization
+
 if [ ! -r data/atm_data ]
 then
 	do_input_data atm

ionization/build_and_test

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+../utils/build_and_test

ionization/build_and_test_parallel

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+../utils/build_and_test_parallel

ionization/build_data_and_export

@@ -0,0 +1,31 @@
+#!/bin/bash
+
+function check_okay {
+	if [ $? -ne 0 ]
+	then
+		exit 1
+	fi
+}
+
+
+echo 'create ionization_data'
+
+rm -rf ionization_data
+
+echo 'tar xfJ ionization_data.tar.xz'
+tar xfJ test/ionization_data.tar.xz
+check_okay
+
+rm -rf ../data/ionization_data
+check_okay
+
+mkdir ../data/ionization_data
+check_okay
+
+mv ionization_data/*.data ../data/ionization_data
+check_okay
+
+mkdir ../data/ionization_data/cache
+check_okay
+
+echo "done"

ionization/clean

@@ -0,0 +1,2 @@
+cd make; make clean
+cd ../test/make; make clean

ionization/export

@@ -0,0 +1,2 @@
+
+../utils/e1