lapack stuff

Author: sbryngelson

.github/workflows/cleanliness.yml

@@ -41,8 +41,8 @@ jobs:
           - name: Setup Ubuntu
             run: |
               sudo apt update -y
-              sudo apt install -y tar wget make cmake gcc g++ python3 python3-dev "openmpi-*" libopenmpi-dev
-          
+              sudo apt install -y tar wget make cmake gcc g++ python3 python3-dev "openmpi-*" libopenmpi-dev libblas-dev liblapack-dev         
+
           - name: Build
             run: |
               (cd pr && /bin/bash mfc.sh build -j $(nproc) --debug 2> ../pr.txt) 

.github/workflows/coverage.yml

@@ -30,7 +30,7 @@ jobs:
       - name: Setup Ubuntu
         run: |
             sudo apt update -y
-            sudo apt install -y tar wget make cmake gcc g++ python3 python3-dev "openmpi-*" libopenmpi-dev
+            sudo apt install -y tar wget make cmake gcc g++ python3 python3-dev "openmpi-*" libopenmpi-dev libblas-dev liblapack-dev
 
       - name: Build
         run: /bin/bash mfc.sh build -j $(nproc) --gcov

.github/workflows/test.yml

@@ -53,7 +53,7 @@ jobs:
         run:  |
           brew update
           brew upgrade
-          brew install coreutils python cmake fftw hdf5 gcc@15 boost open-mpi
+          brew install coreutils python cmake fftw hdf5 gcc@15 boost open-mpi lapack
           echo "FC=gfortran-15" >> $GITHUB_ENV
           echo "BOOST_INCLUDE=/opt/homebrew/include/" >> $GITHUB_ENV
 
@@ -62,7 +62,8 @@ jobs:
         run: |
            sudo apt update -y
            sudo apt install -y cmake gcc g++ python3 python3-dev hdf5-tools \
-                    libfftw3-dev libhdf5-dev openmpi-bin libopenmpi-dev
+                    libfftw3-dev libhdf5-dev openmpi-bin libopenmpi-dev \
+                    libblas-dev liblapack-dev
 
       - name: Setup Ubuntu (Intel)
         if:   matrix.os == 'ubuntu' && matrix.intel == true

README.md

@@ -90,7 +90,7 @@ It's rather straightforward.
 We'll give a brief intro. here for MacOS.
 Using [brew](https://brew.sh), install MFC's dependencies:
 ```shell
-brew install coreutils python cmake fftw hdf5 gcc boost open-mpi
+brew install coreutils python cmake fftw hdf5 gcc boost open-mpi lapack
 ```
 You're now ready to build and test MFC!
 Put it to a convenient directory via
@@ -199,7 +199,7 @@ They are organized below.
 
 * [Fypp](https://fypp.readthedocs.io/en/stable/fypp.html) metaprogramming for code readability, performance, and portability
 * Continuous Integration (CI)
-	* Approx. 500 Regression tests with each PR.
+	* > 500 Regression tests with each PR.
  		* Performed with GNU (GCC), Intel (oneAPI), Cray (CCE), and NVIDIA (NVHPC) compilers on NVIDIA and AMD GPUs.
 		* Line-level test coverage reports via [Codecov](https://app.codecov.io/gh/MFlowCode/MFC) and `gcov`
 	* Benchmarking to avoid performance regressions and identify speed-ups

docs/documentation/getting-started.md

@@ -14,7 +14,6 @@ cd MFC
 MFC can be built in multiple ways on various operating systems.
 Please select your desired configuration from the list bellow:
 
-<details>
   <summary><h2>*nix</h2></summary>
 
 - **On supported clusters:** Load environment modules
@@ -31,15 +30,14 @@ sudo apt upgrade
 sudo apt install tar wget make cmake gcc g++      \
                  python3 python3-dev python3-venv \
                  openmpi-bin libopenmpi-dev       \
-                 libhdf5-dev libfftw3-dev
+                 libhdf5-dev libfftw3-dev         \
+                 libblas-dev liblapack-dev
 ```
 
-If you wish to build MFC using [NVidia's NVHPC SDK](https://developer.nvidia.com/hpc-sdk),
+If you wish to build MFC using [NVIDIA's NVHPC SDK](https://developer.nvidia.com/hpc-sdk),
 first follow the instructions [here](https://developer.nvidia.com/nvidia-hpc-sdk-downloads).
 
-</details>
 
-<details>
   <summary><h2>Windows</h2></summary>
 
 On Windows, you can either use Intel Compilers with the standard Microsoft toolchain,
@@ -96,16 +94,13 @@ You will also have access to the `.sln` Microsoft Visual Studio solution files f
 
   </details>
 
-</details>
-
-<details>
   <summary><h3>MacOS</h3></summary>
 
 Using [Homebrew](https://brew.sh/) you can install the necessary dependencies
 before configuring your environment:
 
 ```shell
-brew install coreutils python cmake fftw hdf5 gcc boost open-mpi
+brew install coreutils python cmake fftw hdf5 gcc boost open-mpi lapack
 echo -e "export BOOST_INCLUDE='$(brew --prefix --installed boost)/include'" | tee -a ~/.bash_profile ~/.zshrc
 . ~/.bash_profile 2>/dev/null || . ~/.zshrc 2>/dev/null
 ! [ -z "${BOOST_INCLUDE+x}" ] && echo 'Environment is ready!' || echo 'Error: $BOOST_INCLUDE is unset. Please adjust the previous commands to fit with your environment.'

docs/documentation/papers.md

@@ -1,5 +1,19 @@
 # Papers
 
+MFC 5.0: An exascale many-physics flow solver. [<b>Wilfong, B., Le Berre, H., Radhakrishnan, A.,</b> Gupta, A., Vaca-Revelo, D., Adam , D., Yu, H., Lee, H., Chreim, J. R., Carcana Barbosa, M., Zhang, Y., Cisneros-Garibay, E., Gnanaskandan, A., Rodriguez Jr., M., Budiardja, R. D., Abbott, S., Colonius, T., & Bryngelson, S. H. (2025) MFC 5.0: An exascale many-physics flow solver. arXiv:2503.07953. <b>Equal contribution.</b>](https://doi.org/10.48550/arXiv.2503.07953)
+
+```bibtex
+@article{Wilfong_2025,
+  author = {Wilfong, Benjamin and {Le Berre}, Henry and Radhakrishnan, Anand and Gupta, Ansh and Vaca-Revelo, Diego and Adam, Dimitrios and Yu, Haocheng and Lee, Hyeoksu and Chreim, Jose Rodolfo and {Carcana Barbosa}, Mirelys and Zhang, Yanjun and Cisneros-Garibay, Esteban and Gnanaskandan, Aswin and {Rodriguez Jr.}, Mauro and Budiardja, Reuben D. and Abbott, Stephen and Colonius, Tim and Bryngelson, Spencer H.},
+  title = {{MFC 5.0: A}n exascale many-physics flow solver},
+  journal = {arXiv preprint arXiv:2503.07953},
+  year = {2025},
+  doi = {10.48550/arXiv.2503.07953}
+}
+```
+
+<br/>
+
 MFC: An open-source high-order multi-component, multi-phase, and multi-scale compressible flow solver. [S. H. Bryngelson, K. Schmidmayer, V. Coralic, K. Maeda, J. Meng, T. Colonius (2021) Computer Physics Communications **266**, 107396](https://doi.org/10.1016/j.cpc.2020.107396)
 
 ```bibtex