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‎.gitignore‎

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doc/Doxygen/*/html
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doc/Doxygen/*logo*
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doc/Doxygen/*icon*
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src/*/*.mod
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src/*/*.o
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src/pre_process_code/pre_process
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src/simulation_code/simulation
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src/post_process_code/post_process
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src/master_scripts/*.pyc
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src/master_scripts/__*
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make_doc.sh
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cases/
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.DS_Store
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tests/*/D/*
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tests/*/p*
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tests/*/D_*
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tests/*/*.inf
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tests/*/*.inp
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tests/*/*.dat
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tests/*/silo*
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tests/*/restart*
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tests/*/*.out
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tests/*/binary
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example_cases/*/D/*
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example_cases/*/p*
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example_cases/*/D_*
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example_cases/*/*.inf
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example_cases/*/*.inp
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example_cases/*/*.dat
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example_cases/*/silo*
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example_cases/*/restart*
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example_cases/*/*.out
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example_cases/*/binary
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lib/fftw-3.3.8

‎AUTHORS‎

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The MFC is distributed under the GNU GPLv3 license (or later).
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Contributors: S. H. Bryngelson, K. Schmidmayer, V. Coralic, J. Meng, K. Maeda, T. Colonius
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Spencer H. Bryngelson
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--------------------------------------------
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Senior Postdoctoral Scholar
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California Institute of Technology
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Pasadena, California, USA
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Email: [email protected]
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Kevin Schmidmayer
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--------------------------------------------
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Postdoctoral Scholar
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California Institute of Technology
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Pasadena, California, USA
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Email: [email protected]
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Vedran Coralic
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--------------------------------------------
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Senior Research Scientist
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Prime Air, Amazon Inc.
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Seattle, Washington, USA
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Email: [email protected]
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Jomela Meng
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--------------------------------------------
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Research Engineer
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Bosch Research and Technology Center
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Sunnyvale, California, USA
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Email: [email protected]
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Kazuki Maeda
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--------------------------------------------
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Acting Assistant Professor
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University of Washington
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Seattle, Washington, USA
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Email: [email protected]
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Tim Colonius
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--------------------------------------------
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Frank and Ora Lee Marble Professor of Mechanical Engineering
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California Institute of Technology
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Pasadena, California, USA
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Email: [email protected]

‎CONFIGURE‎

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#> Simulations using MFC depend upon Python, MPI,
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#> and FFTW.
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## Python ##
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If you do not have Python, it can be installed via
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Homebrew on OSX (https://www.brew.sh) as:
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$$ brew install python
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or compiled via your favorite package manager on Unix
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systems.
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## MPI ##
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An MPI fortran compiler is required for all systems.
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If you do not have one, Homebrew can take care of this
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on OSX:
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$$ brew install open-mpi
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or compiled via another package manager on Unix systems.
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## FFTW ##
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If you already have FFTW compiled:
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- Specify the location of your FFTW library and
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include files in Makefile.user (fftw_lib_dir and
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fftw_include_dir)
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If you do not have FFTW compiler, the library and
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installer are included in this package. Just:
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$$ cd installers
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$$ ./install_fftw.sh
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#> Post-processing of parallel data files is not required,
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#> but can indeed be handled with the MFC. For this, HDF5
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#> and Silo must be installed
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On OSX, a custom tap for Silo is included in the installers
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directory. You can use it via
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$$ cd lib
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$$ brew install silo.rb
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This will install silo and its dependences (including HDF5)
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in their usual locations (/usr/local/lib and
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/usr/local/include)
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On Unix systems, you can install via a package manager or
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from source. On CentOS (also Windows 7), HDF5
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binaries can be found at
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https://support.hdfgroup.org/ftp/HDF5/current18/bin/
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Untar this archive in your intended location via
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$$ tar -zxf [your HDF5 archive]
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Silo should be downloaded at
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https://wci.llnl.gov/simulation/computer-codes/silo/downloads
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then
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$$ tar -zxf [your Silo archive]
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$$ cd [your Silo archive]
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$$ ./configure --prefix=[target installation directory] --enable-pythonmodule --enable-optimization --disable-hzip --disable-fpzip --enableportable-binary FC=mpif90 F77=mpif77 -with-hdf5=[your hdf5 directory]/include,/[your hdf5 directory]/lib --disable-silex
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$$ make
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$$ make install
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then add this line to your ~/.bash_profile
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export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/[your silo directory]/lib:/[your hdf5 directory]/lib
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and
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$$ source ~/.bash_profile
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You will then need to modify silo_lib_dir and silo_include_dir in
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Makefile.user to point to your silo directory

‎COPYRIGHT‎

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MFC
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Copyright © 2019 Spencer Bryngelson, Kevin Schmidmayer, Vedran Coralic, Jomela Meng, Kazuki Maeda, Timothy Colonius

‎INSTALL‎

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READ "CONFIGURE" BEFORE PROCEEDING WITH INSTALL
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Once all dependencies have been installed, the MFC can be built via
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$$ make
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from the MFC directory. This will build all MFC components. Individual
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components can be built via
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$$ make [component]
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where [component] is one of "pre_process,simulation,post_process".
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Once this is completed, you can ensure that the software is working
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as intended by running
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$$ make test

‎Makefile‎

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include Makefile.user
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default: all
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include installers/Makefile.messages
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all: pre_process simulation post_process
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pre_process:
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@$(MAKE) -C src/pre_process_code -f makefile
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simulation:
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ifneq ("$(wildcard $(fftw_include_dir)/fftw3.*)","")
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ifneq ("$(wildcard $(fftw_lib_dir)/libfftw*.la)","")
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@$(MAKE) -C src/simulation_code -f makefile
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else
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@echo "$$FFTW_LIB_ERR"
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endif
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else
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@echo "$$FFTW_INC_ERR"
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endif
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post_process:
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ifneq ("$(wildcard $(silo_include_dir)/silo_*.inc)","")
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ifneq ("$(wildcard $(silo_lib_dir)/libsilo*.*a)","")
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@$(MAKE) -C src/post_process_code -f makefile
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else
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@echo "$$SILO_LIB_ERR"
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endif
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else
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@echo "$$SILO_INC_ERR"
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endif
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test:
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./tests/checks.sh
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.PHONY: clean
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clean:
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@$(MAKE) -C src/pre_process_code -f makefile clean
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@$(MAKE) -C src/simulation_code -f makefile clean
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@$(MAKE) -C src/post_process_code -f makefile clean

‎Makefile.in‎

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include ../../Makefile.user
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########################## FFTW Flags ###########################
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# Linker flags
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ifdef fftw_lib_dir
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ld_sim_flags = -L$(fftw_lib_dir) -lfftw3 -lm
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else
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ld_sim_flags =
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endif
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# Header flags
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ifdef fftw_include_dir
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hd_flags = -I$(fftw_include_dir)
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else
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hd_flags =
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endif
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# Compiler flags
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f90_flags = $(FFLAGS) $(hd_flags)
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#################### Post-process Silo Flags #####################
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# Linker flags
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ifdef silo_lib_dir
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silo_flags = -L$(silo_lib_dir) -lsiloh5 -lm
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else
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silo_flags =
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endif
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ld_post_flags = $(ld_sim_flags) $(silo_flags)
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# Header flags
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ifdef silo_include_dir
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hd_post_flags = -I$(silo_include_dir)
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else
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hd_post_flags =
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endif
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# Compiler flags
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f90_post_flags = $(f90_flags) $(hd_post_flags)

‎Makefile.user‎

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################ Compiler options ####################
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# Gets the MFC directory [do not modify]
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MFC_DIR:=$(shell dirname $(realpath $(lastword $(MAKEFILE_LIST))))
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### Compiler command ###
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FC = mpif90
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#FC = mpiifort
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### Compiler flags [set according to your compiler] ###
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#Note: Requires -cpp to enable preprocessor
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FFLAGS = -cpp -c -w
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#NOTE: Cray compilers require: -eZ
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######### FFTW library and include locations #########
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######### Set these to the location of FFTW #########
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## For the FFTW included in the MFC package
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fftw_lib_dir = $(MFC_DIR)/lib/fftw-3.3.8/lib
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fftw_include_dir = $(MFC_DIR)/lib/fftw-3.3.8/include
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## Other possible locatins [only use absolute paths]
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#fftw_lib_dir = /usr/local/lib
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#fftw_include_dir = /usr/include
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#fftw_include_dir = /usr/local/include
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######### Silo library and include locations #########
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######### Set these to the location of Silo #########
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######### [ only use absolute paths ] #########
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silo_lib_dir = /usr/local/lib
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silo_include_dir = /usr/local/include
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#silo_lib_dir = /home/spencer/packages/silo-4.10.2/lib
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#silo_include_dir = /home/spencer/packages/silo-4.10.2/include

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